Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1713 ATGGTAGAAGGTAGTGAGACATTGAAAGACTCACAGATGGCCTATGAAGAGGCATTGGATGCACTATCCTCATTGATTGTCAACCGTAGACGCTGTGATAAATCTGGAGATCGATTTGAGTTGATGTTTGAGTATGTAAAGATGCTTGATTTGGAGGAGCCCATGTCACAAATGAAGGTCATTCATGTAGCTGGCACCAAAGGCAAGGGATCTACATGCACCTTTACTGAATCCATATTGCGTAATTGTGGCTTCCGCACTGGCCTTTTCACTTCTCCTCACCTTATTGATATCCGAGAAAGATTTCGCTTGGATGGCATTGATATTAGTGAAGAGAAATTTTTAACCTATTTCTGGTGGTGTTATAATAGGTTAAAGGAAAAAACTAGTGAGGACATACCGATGCCTCACTTGTTTCGCTTTCTTGCATTACTTGCATTCAAAATATTTTCAGATGAGCAGGTGGATGTAGCTATATTGGAGGTTGGCTTAGGTGGAACTTTTGATGCAACCAATGTGGTCCAGGCACCCATTGTATGTGGTATAGCTTCTCTGGGTTACGATCACATGGAACTTCTTGGAAACACTCTTGGTGAGATAGCTTCAGAGAAAGCTGGTATCTTTAAGCGTGGGGCTCCGGCTTTTACTGTATTTCAACCTGATGAAGCCATGCGTGTGCTTAAAGATAAGGCTTTGCAGTTGGATGTGCAACTTACAGTAGTGCCATCATTGGATCCCGAGCTACTTCACGGTCGTAAACTTGGGCTTGAAGGCGAGCACCAGTATCTAAATGCTGGTCTTGCTGTTGCCCTATCCTCCACTTGGCTTCACAGGGCTGACCATTCCGAACTGTCATATGTAGAGCAAAGTAGGTCTTTGCCTGAGCAGTTCATAGAAGGGCTTACCACTGCCAGCTTTGAAGGACGAGCACAGATTGTTCCTGATAGATATACTGATGTTGAATCCCCTGATGATCTTGTATTTTATTTGGATGGGGCCCATAGTCCTGAGAGCATGGAGGCTTGTGGTAGATGGTTTTCTGCTGCAGTAAGACATAACCAGCTAGGGAATTTAAATCATCAGTCGGAGGATAATGGTAGTGGTACATCTTCAAATAAACTTCAAGGATATGATAACGATGAAGCAAGGAAGAAACCTGTACAGGTGTTACTGTTCAATTGTATGGCCGTGCGAGATCCACAATTGCTTCTCCCACCTCTGATCAAAACGTGTGCAAATAATGGTGTCAACTTCAAGAAAGCACTCTTTGTTCCAAATACATCAGTCTTTAACAAGGTTGGAACCCATGGTTTACCAGAAAAAGATGGGCAAGTTGACCTTTCTTGGCAGTTTCATGTTCGAAGGATATGGGAAAACACAACGCAATGTGACAAAGGAAGTGATTCTAAAGGGACTGGTGCTGTAATTGAAGAAGAAAGTGAAAAATCAGAAGTGGGTGGTAAGAATTGTGAGAATAGCACAGTGTTTTCTTCTCTTCCACTGGCTATTAAATGGCTCCGGGATAGTGTCTTGCAGCAGAATCGGTCTGTTCGACTTCAGGTTCTTGTAACTGGATCCTTGCATCTTGTGGGAGATGTATTGAAATTAATCAAGTGA 1617 42.86 MVEGSETLKDSQMAYEEALDALSSLIVNRRRCDKSGDRFELMFEYVKMLDLEEPMSQMKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDIRERFRLDGIDISEEKFLTYFWWCYNRLKEKTSEDIPMPHLFRFLALLAFKIFSDEQVDVAILEVGLGGTFDATNVVQAPIVCGIASLGYDHMELLGNTLGEIASEKAGIFKRGAPAFTVFQPDEAMRVLKDKALQLDVQLTVVPSLDPELLHGRKLGLEGEHQYLNAGLAVALSSTWLHRADHSELSYVEQSRSLPEQFIEGLTTASFEGRAQIVPDRYTDVESPDDLVFYLDGAHSPESMEACGRWFSAAVRHNQLGNLNHQSEDNGSGTSSNKLQGYDNDEARKKPVQVLLFNCMAVRDPQLLLPPLIKTCANNGVNFKKALFVPNTSVFNKVGTHGLPEKDGQVDLSWQFHVRRIWENTTQCDKGSDSKGTGAVIEEESEKSEVGGKNCENSTVFSSLPLAIKWLRDSVLQQNRSVRLQVLVTGSLHLVGDVLKLIK 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19171927 19178099 + PI0029118.1 Cmetu09g1713 366586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1713 538 Gene3D - 4 288 IPR036565 GO:0005524|GO:0009058
Cmetu09g1713 538 Pfam Mur ligase middle domain 63 231 IPR013221 GO:0005524|GO:0009058|GO:0016881
Cmetu09g1713 538 FunFam Folylpolyglutamate synthase 308 538 - -
Cmetu09g1713 538 FunFam Folylpolyglutamate synthase 12 286 - -
Cmetu09g1713 538 MobiDBLite consensus disorder prediction 462 487 - -
Cmetu09g1713 538 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 308 537 IPR036615 GO:0009058|GO:0016881
Cmetu09g1713 538 NCBIfam bifunctional protein FolC 51 351 IPR001645 GO:0004326|GO:0005524|GO:0009396
Cmetu09g1713 538 MobiDBLite consensus disorder prediction 357 376 - -
Cmetu09g1713 538 MobiDBLite consensus disorder prediction 471 486 - -
Cmetu09g1713 538 MobiDBLite consensus disorder prediction 357 378 - -
Cmetu09g1713 538 PIRSF FPGS 1 538 IPR023600 GO:0004326|GO:0005524|GO:0009396
Cmetu09g1713 538 Gene3D - 308 538 IPR036615 GO:0009058|GO:0016881
Cmetu09g1713 538 ProSitePatterns Folylpolyglutamate synthase signature 1. 61 84 IPR018109 GO:0004326|GO:0005524|GO:0009396
Cmetu09g1713 538 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 11 536 IPR001645 GO:0004326|GO:0005524|GO:0009396
Cmetu09g1713 538 ProSitePatterns Folylpolyglutamate synthase signature 2. 159 174 IPR018109 GO:0004326|GO:0005524|GO:0009396
Cmetu09g1713 538 SUPERFAMILY MurD-like peptide ligases, catalytic domain 13 279 IPR036565 GO:0005524|GO:0009058
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1713 K01930 - - csv:101209617 1039.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0554 Cmetu-Chr4:8210956 Cmetu09g1713 Cmetu-Chr9:19171927 4.10E-146 dispersed
Cmetu06g2579 Cmetu-Chr6:7838920 Cmetu09g1713 Cmetu-Chr9:19171927 1.10E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g865 Blo06g01075 . . . . . . . Cmo16g00075 . . . . . Sed02g0861 . Cpe14g00058 Bhi01g01449 Tan01g0150 Cmetu09g1713 . . Mch10g0089 . . . . . . . . . . . . . . . . . . . Bda15g00774 . Bpe12g00371 . . . . . Cma16g00073 . Car16g00064 . . . . . . . . . . Cla05g00947 Cam05g1037 Cec05g1042 Cco05g1036 Clacu05g1028 Cmu05g0978 Cre05g1057 . Csa03g02195 Chy06g01258 .