Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1857 ATGGGCAAAGCCTTCAAATGGTTCCGTGGCCTTCTCCGTCTCAAAAAACCACACCCATTTATCAATCCTTCTCCTAATTCTAAGCTCAACCTCAAATGCCACCACTTCCAAGATAACGAAAAAATCCACCACCATGACGCCCCCGCCGCCTCCCCTGCCGTCGTCAAGATCACCACCACCCGACGGACGATGCCCACAGCGGACCCTGACTCTGCCGCCATCAAAATCCAGGCTGCATTTCGTGGATTTCTGGCAAGGAAGGCATTAAGGGCACTAAGAGGGTTGGTGAGACTTCAGGCATTGGTTCGAGGCCATATCGAGAGGAAGCGGACAGCCGAATGGATAAGGAGGATGCAGGCATTACTGAGAGCACAAGCACGGGCACGAGCAGGACGGAGTCAATCTTCTTTCGATTTCTTGCATTCGGATATCAAATTTTCCAGCTTCTCTTCTACTGATCCTGTTACCCCAGAAAAATTTGAGCACAGCCCACATACTAAGAGCACTAGGTTTAAACAGATGCAGAGGAGTGGCTCAAGATTTACAACTATTGATGCTGAAAACATTGATAGAATCCTTGAAATTGAGAATGAGAAAGCTCACTTTAAGTTGAAACCCAAGAGCCTTTTTAGTTCCATCAAGAATGCTCTATCTTCTTCTGATGTGCCTTCAAAAGAGCCTCCAAGTTCATTTTCCTGTGAAACCCAATGCTTTAGTCCATTTAAATTCTCTCATGAAGTTGAGGAGAGCTCTTTCTTTTCTGTCTCATCAAGGGGTGGCAGTACAAAGAAAAGCCCCTTCACCCCGGCTAAGAGCGACAGTACGAGAAGCTATTTCAGTGGCGACTCTGAATATCCAAGTTACATGGCCTGTACTGAATCTTCAAGAGCCAAAATGAGATCTCATAGCGCTCCAAGACAGCGTCCTCAGTACGAAAGATCGAGTTCTGCAAAACGGGGTTCTGCTTACCTTGTGGGCGAATCGAGATTAACTGCACAGCAGGTATCAACATTGCAGTCTAATTTTGTTGGGAAAACCTACCCCGGTTCTGGTCGACTGGACAAACTCGGGATGCCTGTGGATTACAGATACTGA 1095 46.94 MGKAFKWFRGLLRLKKPHPFINPSPNSKLNLKCHHFQDNEKIHHHDAPAASPAVVKITTTRRTMPTADPDSAAIKIQAAFRGFLARKALRALRGLVRLQALVRGHIERKRTAEWIRRMQALLRAQARARAGRSQSSFDFLHSDIKFSSFSSTDPVTPEKFEHSPHTKSTRFKQMQRSGSRFTTIDAENIDRILEIENEKAHFKLKPKSLFSSIKNALSSSDVPSKEPPSSFSCETQCFSPFKFSHEVEESSFFSVSSRGGSTKKSPFTPAKSDSTRSYFSGDSEYPSYMACTESSRAKMRSHSAPRQRPQYERSSSAKRGSAYLVGESRLTAQQVSTLQSNFVGKTYPGSGRLDKLGMPVDYRY 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2282829 2286383 - PI0010833.1 Cmetu09g1857 366730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1857 364 MobiDBLite consensus disorder prediction 155 177 - -
Cmetu09g1857 364 ProSiteProfiles IQ motif profile. 70 97 IPR000048 GO:0005515
Cmetu09g1857 364 ProSiteProfiles IQ motif profile. 93 120 IPR000048 GO:0005515
Cmetu09g1857 364 MobiDBLite consensus disorder prediction 294 319 - -
Cmetu09g1857 364 SMART iq_5 91 112 IPR000048 GO:0005515
Cmetu09g1857 364 SMART iq_5 68 90 IPR000048 GO:0005515
Cmetu09g1857 364 Pfam Protein of unknown function (DUF4005) 260 322 IPR025064 -
Cmetu09g1857 364 PANTHER IQ-DOMAIN 5-RELATED 1 322 - -
Cmetu09g1857 364 MobiDBLite consensus disorder prediction 254 278 - -
Cmetu09g1857 364 Pfam IQ calmodulin-binding motif 71 90 IPR000048 GO:0005515
Cmetu09g1857 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 116 IPR027417 -
Cmetu09g1857 364 Gene3D - 69 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1857 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1182 Cmetu-Chr5:19206606 Cmetu09g1857 Cmetu-Chr9:2282829 8.30E-20 dispersed
Cmetu06g2556 Cmetu-Chr6:3945999 Cmetu09g1857 Cmetu-Chr9:2282829 9.20E-21 dispersed
Cmetu09g1857 Cmetu-Chr9:2282829 Cmetu11g0481 Cmetu-Chr11:2381900 2.30E-09 dispersed
Cmetu06g2517 Cmetu-Chr6:30590700 Cmetu09g1857 Cmetu-Chr9:2282829 1.10E-08 transposed
Cmetu06g0713 Cmetu-Chr6:6974393 Cmetu09g1857 Cmetu-Chr9:2282829 6.20E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g612 . Blo15g00158 Bda05g00058 . Bpe03g00297 . . . Cmo16g00149 . . . . . Sed01g3916 . Cpe14g00120 Bhi01g01353 Tan01g0278 Cmetu09g1857 Lac11g2130 Hepe07g0179 Mch10g0175 . Cla01g00296 Cam01g0307 Cec01g0297 Cco01g0314 Clacu01g0307 Cmu01g0292 Cre09g2216 . . . . Lsi05g01253 Csa05g00319 Chy09g01189 Cme06g00975 . . Bda06g00672 . . . . . . . . Cma16g00142 . . . . . Bhi12g00208 . . Lac11g2130 Hepe06g1578 . Lcy12g1690 Cla05g00859 Cam05g0945 Cec05g0950 Cco05g0950 Clacu05g0932 Cmu05g0890 Cre05g0975 . Csa03g01689 Chy06g00922 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007128 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37