Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1872 ATGGCTGTTGACGTTCATTCCTCTGTTTCTCAAGAACCCATCTCTTTTCCTAATGGACTTCATGATTCTCCTACTAACCCGGATAGAATCGATCGTATTTCCACCCACTCTGTTTCTCAACTTCCATTCATCAATGATTCCGACAATCCCAAGCTCACCGCTAAGCTTTCCATTCCTCATCCTCTAGATGAAAATCAAACCAAGCTCTCTGATATTGAATCTCCCTCTTCCTCTTCTTCTTCTTCTTCTTCCTCCTTCGATACAGAGAAATCAGAGGACTCTATTTCTACCCATCATAACGGTCATATTCCTGTTCGTCCCCACCACGAATTGAAACCCAATAATGGCGAAATACGCGTATTGGAGCCTCATTCTCAACTCCCTAAACCCGAGGCCCCACCTGGGATTTCCATTTCCTCCGCCGATGAACCACCGCACAAACGATCGCAGAGTTTGTCTGAGAATATCTCTGTCGACATGCCGTCGATTGGGAAGTTTATACGTGAGAGAAGCAATAGCTTATCCGCGGCGATTTTTAAGCGGATTTCATCGCTTAAAGATGAAGAGAAGGACGACGAGGACGATAACGGGAAGTCCCAAACCGGCGTAACCGAAATCAATCTCTCCGGTCTCAAAGTTGTGGTGAAATTGAAGAGCGATGAAGAGAGAGACAGAGAACTAAAGGGAAGAATCAGCTTCTTCTCGAGGTCGAATTGCAGGGATTGTAAAGCGGTTAGGAATTTTTTCAACGAAAAGGGATTGAGGTTTGTTGAGATCAACGTCGATGTTTTTCCTCAAAGAGAGAAGGAGTTGATGAAGAGGACGGGAAGTACATTAGTGCCGCAGATTTTCTTCAACGACAAGCTCTTTGGGGGTCTTGTAGCCTTAAACTCCCTAAGAAACAGCGGCGAATTTGACCGAAGAATCAAAGATATGCTTAGCCATAAATCCCCCGACGACGCACCGGCTCCGCCAGTGTACGGTTTCGACGACCCAGATGAAGGATCGCCGGACGAACTACTCGAGATCGTGAAATTTCTGAGACAGAGATTGCCGATTCAGGACCGTCTGATCAAGATGAAGATCGTCAAGAACTGCTTCTCCGGCAGCGAAATGGTGGAAGCGCTTATTCACCGCCTTGACTGCGGCCGTAGAAAGGCTGTTGAAATTGGAAAGCAGATGACCCAGAAGCTCTTTATCCATCATGTATTTGGGGAAAATGAATTTGAAGATGGGAATCACTTCTATAGATTCCTCGAGCATGGGCCATTTATATCTCGTTGCTTCAATTTCAGGGGCTCAGTTAATGACAATGAGCCCAAGCCCGCTGCCATTGTTGCACAAAAGCTCGCCAAGATCATGTCCGCCATTTTAGAATCTTATGCCTCTGAAAATCTCCAACATGTTGATTATTTCACCATTAGCAACACTGAAGAATTTCGAAGGTACATAAATGTAATAGAAGACCTTCACCGCGTGAACCTCTTGGAACTGTCACATGATGAAAAATTGGCTTTTTTCCTAAACCTTTACAATGCTATGGTGATTCATGGGTTGATAAGATTTGGACGACTAGAGGGTGTAATTGACAGAAAATCCTTCTTCTCGGATTTCCAATACTTGGTCGGTGGACACCCATATTCACTTATAGCCATAAAGAATGGGATTCTCAGAGGCAATAGGAGGCCACCTTATTCCTTTGTTAAGCCCTTCAGCAGTTCTGACAAGCGATTGGAACTTGCATATGGGGAAGTGAATCCATTAATTCACTTTGGACTGTGCAATGGCACAAAGTCAAGCCCAAGAGTGAGATTCTATACTCCTCAAGGAGTCGAAGCAGAGCTAAGATGCGCCGCAAGAGAATTCTTCCAAAGTGGAGGAGTGGAGGTTGACTTGGACAAAAGAACTGTATATCTCACTGGAATCATCAAGTGGTTCAGTGTAGACTTTGGGCATGAGAAAGAAATCTTGAAGTGGATAATGAAGTACTTGGATGCCAACAAAGCAGGTCTTTTAACACACCTTTTGGGAGATGGAGGTCCAGTCAACATAGCTTACCAAAACTATAATTGGACCATGAATTCTTCTTAA 2091 44.38 MAVDVHSSVSQEPISFPNGLHDSPTNPDRIDRISTHSVSQLPFINDSDNPKLTAKLSIPHPLDENQTKLSDIESPSSSSSSSSSSFDTEKSEDSISTHHNGHIPVRPHHELKPNNGEIRVLEPHSQLPKPEAPPGISISSADEPPHKRSQSLSENISVDMPSIGKFIRERSNSLSAAIFKRISSLKDEEKDDEDDNGKSQTGVTEINLSGLKVVVKLKSDEERDRELKGRISFFSRSNCRDCKAVRNFFNEKGLRFVEINVDVFPQREKELMKRTGSTLVPQIFFNDKLFGGLVALNSLRNSGEFDRRIKDMLSHKSPDDAPAPPVYGFDDPDEGSPDELLEIVKFLRQRLPIQDRLIKMKIVKNCFSGSEMVEALIHRLDCGRRKAVEIGKQMTQKLFIHHVFGENEFEDGNHFYRFLEHGPFISRCFNFRGSVNDNEPKPAAIVAQKLAKIMSAILESYASENLQHVDYFTISNTEEFRRYINVIEDLHRVNLLELSHDEKLAFFLNLYNAMVIHGLIRFGRLEGVIDRKSFFSDFQYLVGGHPYSLIAIKNGILRGNRRPPYSFVKPFSSSDKRLELAYGEVNPLIHFGLCNGTKSSPRVRFYTPQGVEAELRCAAREFFQSGGVEVDLDKRTVYLTGIIKWFSVDFGHEKEILKWIMKYLDANKAGLLTHLLGDGGPVNIAYQNYNWTMNSS 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6398583 6406098 - PI0013709.1 Cmetu09g1872 366745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1872 696 Pfam Protein of unknown function, DUF547 497 622 IPR006869 -
Cmetu09g1872 696 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 351 418 IPR000591 GO:0035556
Cmetu09g1872 696 MobiDBLite consensus disorder prediction 1 113 - -
Cmetu09g1872 696 MobiDBLite consensus disorder prediction 30 52 - -
Cmetu09g1872 696 Gene3D Glutaredoxin 227 313 - -
Cmetu09g1872 696 MobiDBLite consensus disorder prediction 125 156 - -
Cmetu09g1872 696 MobiDBLite consensus disorder prediction 91 113 - -
Cmetu09g1872 696 SMART DEP_3 347 420 IPR000591 GO:0035556
Cmetu09g1872 696 ProSiteProfiles DEP domain profile. 347 420 IPR000591 GO:0035556
Cmetu09g1872 696 SUPERFAMILY Thioredoxin-like 229 311 IPR036249 -
Cmetu09g1872 696 CDD DEP 339 417 - -
Cmetu09g1872 696 Pfam Glutaredoxin 233 289 IPR002109 -
Cmetu09g1872 696 MobiDBLite consensus disorder prediction 68 90 - -
Cmetu09g1872 696 ProSiteProfiles Glutaredoxin domain profile. 219 316 - -
Cmetu09g1872 696 MobiDBLite consensus disorder prediction 8 22 - -
Cmetu09g1872 696 Gene3D - 338 469 IPR036388 -
Cmetu09g1872 696 SUPERFAMILY Winged helix DNA-binding domain 338 441 IPR036390 -
Cmetu09g1872 696 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 71 694 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1872 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu09g1872 Cmetu-Chr9:6398583 Cmetu11g0871 Cmetu-Chr11:29447908 3.10E-18 dispersed
Cmetu03g0002 Cmetu-Chr3:25860443 Cmetu09g1872 Cmetu-Chr9:6398583 9.40E-114 transposed
Cmetu06g1868 Cmetu-Chr6:10887349 Cmetu09g1872 Cmetu-Chr9:6398583 7.90E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g352 . . . . . . . . . . . . . . Sed11g1510 . . Bhi04g02500 Tan11g0084 Cmetu09g1872 . Hepe02g3440 . Lcy10g2331 . . . . . . . . Cone7ag1572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00765 Cam11g0798 Cec11g0780 Cco11g0785 Clacu11g1059 Cmu11g0919 Cre11g1244 . . Chy03g00066 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37