Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1930 ATGCCTTTTCTTCACCCCCATCTTCCTCCCATTCGTTTTTCTTCAATAACCCTTTTCCATTTCTTCCTCATCATGCCATTACTCCGTCCCGCCGCTGCGTCCTTGCCGGAAGTTTTTTCCCCACGTCTCGCCGATAGGGGCCCTGTTATTCCGGTAACCAATCTCGTTAAGTTTCTTGAGCGTCTTCAGGTTGTGGCTCTGAATTCGTTTGGGAAATTGGATTTTGATCTTAAATATTATGTCGATTTGTCTCTGAAATTCGATTTGAACTCTACCCAAATGGCTTTCGATGCCCTCGAACGATCCACCAATGGCTCTGTTTCCGTTGAGAATTTGAGGACATTCATTTCGTACTATTTCGATAGTGCCGGAACCGACTTGATTTACTCTAATCCGGTCGATTTTGTCCCTCAGCCTGATGGGTTTTTGCCCAAAGTTGAGAATGTGGAGGTTAGAGCTTGGGCTTTCGATATTCATAATTTTTGGAAGAATCTTAGCCGTAGAGTCTCTGATGATCTCATTCGTCGGCCTGATACCCACACTTTGCTGCCGTTGCCGGAGCCTGTTGTCGTTCCAGGATCTAGATTCCGGGAAATATACTATTGGGATTCTTATTGGATTATCAGAGGTTTGTTAGCTAGTAAAATGTATGATACTGCTAAGGGAATTGTTATTAATCTCATTTCAATGATCGATGAGTTTGGCCATGTTCTTAATGGTGCCAGATCTTATTACACTAACAGAAGTCAGCCTCCCCTTTTGAGTTCCATGGTTTATGACATATACCTTAGGACTGGGGATTTAGAGTTTGTGAGAAATTCACTCCCAGCTTTAATCAAAGAGCATAAGTTTTGGACTTCAGGATTCCATTCAATTACTGTCCGAAATGCTCCTGGTGGAAATGGAAATCACTCTTTGTCTAGGTACTATGCAATGTGGAACGAACCGAGGCCGGAATCTTCGCTGGTGGATGAGAAACTTGCCTCGAAGTTTGTGAATAACTATGAAAAACAGCATCTATACCGGGAAATCGCATCAGCAGCCGAATCCGGTTGGGATTTCAGTTCAAGATGGATGAGGGATTCGACAGACTTATCAACATTGGCTACAACTTCAATCTTGCCAGTTGATCTTAATGTATTCATACTCAAGATGGAACTTGACATTTCCAATTTGGCAAGAGCCGTTGGAGATTACTGCACGGCAGAACACTTTTTTGAGGCCTCTCTAGTTAGAAAGAAGACCATCAACTCTATTTTTTGGAATTCAGAGAAGGGACAGTGGCTTGATTACTGGCTTGATAACGGCTCATACAAGGGTGCTCATTCATGGGATGCTCGAAATCAGAACCAGAACGTATACGCTTCAAACTTCATTCCCTTGTGGATCGAATCATTCTACTCCGATAGTAGACAGATGAAGAAAGTTTTGAAAAGTTTACGGAACTCAGGCTTGTTGTGCAATGCTGGGATTGCAACTTCAATGATTAATTCGGGGGAACAATGGGATTTCCCCAACGGTTGGGCGCCAATCCAACACATGATTGTCGAGGGACTGGCAAGGTCCGAATTGCCAGAAGCAAGGGCATTGGCTGAGGACATCGCCGCGAGATGGCTCCGAACCAACTATGTAGCTTACAAGCACACAGGATTTATGCATGAGAAATATGATGTCCAAAAGTGTGGAGACTTTGGTGGAGGAGGTGAATACGTCCCTCAGACTGGTTTTGGATGGTCAAATGGAGTTGTTTTGGCATTCCTTGAAGAGTTTGGATGGCCAAAAGATCAAAAGATAGACTGCTACTTACCTTCTTAA 1815 43.58 MPFLHPHLPPIRFSSITLFHFFLIMPLLRPAAASLPEVFSPRLADRGPVIPVTNLVKFLERLQVVALNSFGKLDFDLKYYVDLSLKFDLNSTQMAFDALERSTNGSVSVENLRTFISYYFDSAGTDLIYSNPVDFVPQPDGFLPKVENVEVRAWAFDIHNFWKNLSRRVSDDLIRRPDTHTLLPLPEPVVVPGSRFREIYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARSYYTNRSQPPLLSSMVYDIYLRTGDLEFVRNSLPALIKEHKFWTSGFHSITVRNAPGGNGNHSLSRYYAMWNEPRPESSLVDEKLASKFVNNYEKQHLYREIASAAESGWDFSSRWMRDSTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEHFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHSWDARNQNQNVYASNFIPLWIESFYSDSRQMKKVLKSLRNSGLLCNAGIATSMINSGEQWDFPNGWAPIQHMIVEGLARSELPEARALAEDIAARWLRTNYVAYKHTGFMHEKYDVQKCGDFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPKDQKIDCYLPS 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1423937 1427988 - PI0022249.1 Cmetu09g1930 366803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1930 604 ProSitePatterns Trehalase signature 2. 501 510 IPR018232 GO:0004555|GO:0005991
Cmetu09g1930 604 Gene3D - 61 600 IPR012341 GO:0005975
Cmetu09g1930 604 PRINTS Glycosyl hydrolase family 37 signature 234 252 IPR001661 GO:0004555|GO:0005991
Cmetu09g1930 604 PRINTS Glycosyl hydrolase family 37 signature 574 587 IPR001661 GO:0004555|GO:0005991
Cmetu09g1930 604 PRINTS Glycosyl hydrolase family 37 signature 306 323 IPR001661 GO:0004555|GO:0005991
Cmetu09g1930 604 PRINTS Glycosyl hydrolase family 37 signature 416 432 IPR001661 GO:0004555|GO:0005991
Cmetu09g1930 604 PRINTS Glycosyl hydrolase family 37 signature 341 358 IPR001661 GO:0004555|GO:0005991
Cmetu09g1930 604 PRINTS Glycosyl hydrolase family 37 signature 373 390 IPR001661 GO:0004555|GO:0005991
Cmetu09g1930 604 PRINTS Glycosyl hydrolase family 37 signature 494 510 IPR001661 GO:0004555|GO:0005991
Cmetu09g1930 604 Pfam Trehalase 73 591 IPR001661 GO:0004555|GO:0005991
Cmetu09g1930 604 PANTHER TREHALASE 59 598 IPR001661 GO:0004555|GO:0005991
Cmetu09g1930 604 SUPERFAMILY Six-hairpin glycosidases 70 593 IPR008928 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1930 K01194 - - csv:101208719 1175.61
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1930 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 57.2 9.4e-192 667.2
Cmetu01g1624 . 71 911 Trehalose Biosynthesis Gene Families AT1G06410 78.1 0.0e+00 1375.1
Cmetu04g0191 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1347.8
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G06410 66.9 0.0e+00 1127.9
Cmetu10g0261 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.0 0.0e+00 1097.4
Cmetu02g0557 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 3.8e-305 1044.3
Cmetu07g2039 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.2e-248 856.3
Cmetu12g0972 . 87 694 Trehalose Biosynthesis Gene Families AT1G16980 64.4 1.7e-239 825.9
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1349.7
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1208.7
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1103.2
Cmetu01g1624 . 71 912 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1096.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G23870 63.2 0.0e+00 1087.4
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.0 0.0e+00 1335.5
Cmetu02g0557 . 1 842 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1223.8
Cmetu04g0191 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.2 0.0e+00 1079.3
Cmetu01g1624 . 71 915 Trehalose Biosynthesis Gene Families AT1G60140 60.1 6.5e-313 1070.1
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G60140 60.7 1.5e-309 1058.9
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G68020 72.2 0.0e+00 1238.4
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.2
Cmetu01g1624 . 71 914 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1144.0
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1112.1
Cmetu02g0557 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1098.6
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.2 0.0e+00 1196.8
Cmetu02g0557 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 64.2 0.0e+00 1107.0
Cmetu04g0191 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.5e-293 1005.7
Cmetu01g1624 . 71 921 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.3e-291 998.4
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.9e-278 954.9
Cmetu07g2039 . 1 825 Trehalose Biosynthesis Gene Families AT1G78580 84.2 0.0e+00 1400.2
Cmetu12g0972 . 1 912 Trehalose Biosynthesis Gene Families AT1G78580 74.1 0.0e+00 1356.7
Cmetu10g0261 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cmetu02g0557 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 5.4e-299 1023.8
Cmetu04g0191 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 7.1e-299 1023.5
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.1e-290 995.3
Cmetu01g1624 . 126 911 Trehalose Biosynthesis Gene Families AT2G18700 59.5 3.5e-290 994.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1353.2
Cmetu04g0191 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1184.5
Cmetu01g1624 . 71 919 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1163.3
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.0 0.0e+00 1138.6
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1108.6
Cmetu07g2039 . 93 814 Trehalose Biosynthesis Gene Families AT4G27550 68.0 8.7e-296 1013.1
Cmetu12g0972 . 92 910 Trehalose Biosynthesis Gene Families AT4G27550 60.4 3.9e-288 987.6
Cmetu07g2039 . 1 825 Trehalose Biosynthesis Gene Families AT1G78580 84.2 0.0e+00 1400.2
Cmetu12g0972 . 1 912 Trehalose Biosynthesis Gene Families AT1G78580 74.1 0.0e+00 1356.7
Cmetu07g2039 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.2e-248 856.3
Cmetu12g0972 . 87 694 Trehalose Biosynthesis Gene Families AT1G16980 64.4 1.7e-239 825.9
Cmetu07g2039 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 7.3e-194 674.5
Cmetu12g0972 . 92 609 Trehalose Biosynthesis Gene Families AT1G17000 61.1 1.0e-187 654.1
Cmetu07g2039 . 93 814 Trehalose Biosynthesis Gene Families AT4G27550 68.0 8.7e-296 1013.1
Cmetu12g0972 . 92 910 Trehalose Biosynthesis Gene Families AT4G27550 60.4 3.9e-288 987.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1353.2
Cmetu04g0191 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1184.5
Cmetu01g1624 . 71 919 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1163.3
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.0 0.0e+00 1138.6
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1108.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G68020 72.2 0.0e+00 1238.4
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.2
Cmetu01g1624 . 71 914 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1144.0
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1112.1
Cmetu02g0557 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1098.6
Cmetu01g1624 . 71 911 Trehalose Biosynthesis Gene Families AT1G06410 78.1 0.0e+00 1375.1
Cmetu04g0191 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1347.8
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G06410 66.9 0.0e+00 1127.9
Cmetu10g0261 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.0 0.0e+00 1097.4
Cmetu02g0557 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 3.8e-305 1044.3
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.2 0.0e+00 1196.8
Cmetu02g0557 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 64.2 0.0e+00 1107.0
Cmetu04g0191 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.5e-293 1005.7
Cmetu01g1624 . 71 921 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.3e-291 998.4
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.9e-278 954.9
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1349.7
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1208.7
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1103.2
Cmetu01g1624 . 71 912 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1096.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G23870 63.2 0.0e+00 1087.4
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.0 0.0e+00 1335.5
Cmetu02g0557 . 1 842 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1223.8
Cmetu04g0191 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.2 0.0e+00 1079.3
Cmetu01g1624 . 71 915 Trehalose Biosynthesis Gene Families AT1G60140 60.1 6.5e-313 1070.1
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G60140 60.7 1.5e-309 1058.9
Cmetu10g0261 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cmetu02g0557 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 5.4e-299 1023.8
Cmetu04g0191 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 7.1e-299 1023.5
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.1e-290 995.3
Cmetu01g1624 . 126 911 Trehalose Biosynthesis Gene Families AT2G18700 59.5 3.5e-290 994.6
Cmetu09g1930 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 57.2 9.4e-192 667.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006557 1 3 1 1 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 38