Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1945 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGACACTGTGGCTTCTTCTTTCACAGTTAGAAGTGTAAGATATGGGGAGTGTCAAAAGAACCACGCTGCCGGGGTCGGAGGGTATGCCCTTGACGGGTGTCGAGAATTCATGGCGAGTGGTGACGAAGGGACGACCGCTGGACTGACTTGTGCCGCTTGTGGTTGCCACCGGAATTTTCATAGAAGGCAAGTTGGAACTGAGGTAGTGTGTGATTGTTCTTCATCACCCTCAAATGGAACTTAA 291 49.83 MRKRQVVLRRSEEPSRDTVASSFTVRSVRYGECQKNHAAGVGGYALDGCREFMASGDEGTTAGLTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19775919 19776654 - PI0021138.1 Cmetu09g1945 366818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1945 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cmetu09g1945 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
Cmetu09g1945 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 81 - -
Cmetu09g1945 96 Pfam ZF-HD protein dimerisation region 28 79 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1945 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1465 Cmetu-Chr2:23678679 Cmetu09g1945 Cmetu-Chr9:19775919 1.90E-24 dispersed
Cmetu09g1945 Cmetu-Chr9:19775919 Cmetu10g1264 Cmetu-Chr10:4711007 1.20E-16 dispersed
Cmetu09g1945 Cmetu-Chr9:19775919 Cmetu09g0673 Cmetu-Chr9:19790625 2.90E-12 tandem
Cmetu10g0522 Cmetu-Chr10:19375279 Cmetu09g1945 Cmetu-Chr9:19775919 2.40E-14 wgd
Cmetu12g0529 Cmetu-Chr12:470913 Cmetu09g1945 Cmetu-Chr9:19775919 3.00E-26 wgd
Cmetu04g0691 Cmetu-Chr4:8701566 Cmetu09g1945 Cmetu-Chr9:19775919 1.20E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1945 . 1 95 Zinc finger-homeobox gene family AT3G28917 77.8 2.1e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8574 PF04770 ZF-HD_dimer 2.70E-29 No_clan Cmetu TF