Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0012 ATGTTCTTGCATATTCAGAAGAGTTTTAAGGGCATTTGGGGTGTTCTTGATCGTTGTAAATCATTTTCCTATTTTCATGTATCCTCTCAAAGCTGTTCCAATGCCCTCTCCCCTGCAAATTTTTCGTATCCGCTGGAACCTAATATCTCTGTAGGAGCTAGAGATTTGCAAAGAGTAACATCTGAATTTCAGACAAAATTTTCAGATATTGACTTCATCGTTGCTAAAGTTCAAGTGGGTAGCAGCGAGGATGAGGTTTTTCAGTCTCTCTTGCAAGATTCAGTGTGTAACAGCATACAATTCTCCCATGAACTTGTTTACAAGTTGCTCCAACGATTCAAAGATGATTGGAAATCTGCTTTGGGTGTTTTTAGATGGGCAGAGTCACTCTCTGGATTCAAGCACACACCAGATTTATATGACATTTTAATCGATACATTGGGAAAAACAAAGCAAATGGTTAAGATGAGAGGTGTGCTTGAAGAAATGAAGGAAGCTCGTCTTGCGACACTTGATACCGTAGCTAAGGCCATGCGAAGGTTTGCTGGTGCTGGACAATGGGAAAATGCTGTTAGGATATTTGATGATTTGGAAACTTATGGGTTGGAGAAGAACACCGAATCAATGAATGTGTTGCTTGATACTCTGTGCAAAGAGAAGAAGGTCGAGCAAGCTCGAAAGATATATTTGGAACTCAAATCACATATTGCCCCAAATGCAAACACGTTTAACATGTTCATTCATGGTTGGTGTAAAATTAATAGGATTGATGAAGCACATTGGGCGTTACAAGAGATGAAAGGTTATGGTCATCGTCCTTGTGTTATTAGTTATTCAACGATTATCCTATTTTATTGTCATCATTGCAATTTTAATAAGGTTTATGAGTTGCTGGATGAAATGGATGCTCAAGGATGCCCTGCAAATGTCGTCACTTATACCACTATCATGTGCTCACTAACAAAGTCGAAAGAATTTGAGGAAGCTTTGCAGATTGCTGAAAGAATGAAATCTGCTGGATGTGAACCCGATACACTTTTTTATAATTGTTTGATCCATACATTGGGGCGAGCAGGTAAAGTACGGGAAGCTATTCATGTATTCAAAGTCGAAATGCCAAGCAAGAGTGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTACTGTCATTGTAAGCAAGAAGAAAAGGCTATGAAACTGCTTGAGGAGATGGAGAAATCAGGGCATTGTAAACTTGATGTCCAGACATATTACCCATTGCTTAAATCCTGCTTTAGAACTGGAAAGACAGACTATGTTCTGAGCAATTTATTGGATGAGATGATAAATAAACATCACCTGAGTCTTGATATTTCAACCTATTCCCTTCTAATTAATGGTCTTTGTAGAGCGAATAAGTGTGAGTGGGCTTACCAGTTATTTGAGAAGATGATTAGTCAAGATTTAAAGCCAATGTATCTTACATGTCAACTGCTTTTGGATGAAGTTAAGCAGAAGAATATGGATGAAGTTGCTGATAGGATTGAAGGTATTATGAAGAAATTGTGA 1557 37.96 MFLHIQKSFKGIWGVLDRCKSFSYFHVSSQSCSNALSPANFSYPLEPNISVGARDLQRVTSEFQTKFSDIDFIVAKVQVGSSEDEVFQSLLQDSVCNSIQFSHELVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQMVKMRGVLEEMKEARLATLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEQARKIYLELKSHIAPNANTFNMFIHGWCKINRIDEAHWALQEMKGYGHRPCVISYSTIILFYCHHCNFNKVYELLDEMDAQGCPANVVTYTTIMCSLTKSKEFEEALQIAERMKSAGCEPDTLFYNCLIHTLGRAGKVREAIHVFKVEMPSKSVLPNTSTYNSMISMYCHCKQEEKAMKLLEEMEKSGHCKLDVQTYYPLLKSCFRTGKTDYVLSNLLDEMINKHHLSLDISTYSLLINGLCRANKCEWAYQLFEKMISQDLKPMYLTCQLLLDEVKQKNMDEVADRIEGIMKKL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17900339 17902866 - PI0009056.1 Cmetu10g0012 366875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0012 518 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Cmetu10g0012 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Cmetu10g0012 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Cmetu10g0012 518 Pfam PPR repeat 140 166 IPR002885 -
Cmetu10g0012 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Cmetu10g0012 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 235 IPR002885 -
Cmetu10g0012 518 NCBIfam pentatricopeptide repeat 383 413 IPR002885 -
Cmetu10g0012 518 NCBIfam pentatricopeptide repeat 348 381 IPR002885 -
Cmetu10g0012 518 NCBIfam pentatricopeptide repeat 242 273 IPR002885 -
Cmetu10g0012 518 NCBIfam pentatricopeptide repeat 140 167 IPR002885 -
Cmetu10g0012 518 NCBIfam pentatricopeptide repeat 276 309 IPR002885 -
Cmetu10g0012 518 NCBIfam pentatricopeptide repeat 456 487 IPR002885 -
Cmetu10g0012 518 NCBIfam pentatricopeptide repeat 311 345 IPR002885 -
Cmetu10g0012 518 Gene3D Tetratricopeptide repeat domain 372 517 IPR011990 GO:0005515
Cmetu10g0012 518 Pfam Pentatricopeptide repeat domain 297 356 IPR002885 -
Cmetu10g0012 518 SUPERFAMILY HCP-like 306 501 - -
Cmetu10g0012 518 Gene3D Tetratricopeptide repeat domain 75 233 IPR011990 GO:0005515
Cmetu10g0012 518 Gene3D Tetratricopeptide repeat domain 234 302 IPR011990 GO:0005515
Cmetu10g0012 518 Gene3D Tetratricopeptide repeat domain 303 371 IPR011990 GO:0005515
Cmetu10g0012 518 Pfam PPR repeat family 204 252 IPR002885 -
Cmetu10g0012 518 Pfam PPR repeat family 379 428 IPR002885 -
Cmetu10g0012 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Cmetu10g0012 518 Pfam PPR repeat 450 480 IPR002885 -
Cmetu10g0012 518 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 44 431 - -
Cmetu10g0012 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Cmetu10g0012 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 379 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0012 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1136 Cmetu-Chr7:24526659 Cmetu10g0012 Cmetu-Chr10:17900339 3.40E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30