Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0036 ATGGGGAAAGCGGATAAAGAGCGGCTCATTCGAACTCTCAATTCGCATCTGAATACCATCCATGAAACTTTTCAGATGTTGGATCAAAACCCATCGTCTTCCCTTGAAAAGGTGAGCTGGGATGATGTTCTAAAAATGGGCGACCAAGTCTACAAGCAAGCCACTGTTGCTGGAATGGTATGGACTGGAGAAAGACTGGAAGTTAAGGCTATTGAGGAAAATATGGCTTCTTATTTCAATATGCTGCAGGGTTTCCTTCTGGTTTCCCATGGGAGTAAAGTAGGTGCTGGTCCTACTTTATCTTCTGTCATCCATGCATCTGTGAAGCAAGTAATTGATTCCAGTTTTAGGTTATGGAAGGAATCGGTCTCTTTATATGGACCACAGAAAAATCAGGATCAAAACCAAGTCGTTCCGCAGTTGGTTGGTGCAGTTTGGGATGCTTGTTCTGCTCTTAAGAAAGCTCCTTCCACAAATATAACTGCAATAGGCCGAGCGATAACCCAGGTAGCTGTATCAGTGAAGGATGTCCTTCGAGAAATGAAGGAGCTTAAACAAGGTTCCTCCGACTTGGACAAAGCTCCTGAAGAGTCTTCGAATGCAGTCGAAGGCGATTCGCAAGATGAGGGTAATACAAGCGATGATGCTGATATAGGTAACGATTTGTCAGCTGAAGAGATGAGAGTTGCTCAATCTGCCATTAGCGTTGTATCTTCAATACTTCTAGTTATAAAGGAACTCATTCGCTCTATCACAAGTTTGCTTAAACTAGAAAATGCAAACAAGGAAAGTAACTTGGCGTCCTTGGAGAATCTATTAAAGCTATGCCAAGGAATTGGACTGCAGGTTGACGAGCTTGGAGCTTGTCTGTACCCCCCACAAGAGGGCCCTGCCATTAAAGTAGCTTCTGAAAAAATCTCTAGCTTTCTTGAAAATATGCAGGCAGAGTTGGGAAGTCTTAATGGTAATTCTGAAGGCTTTCTTCAGGCGTGCAACAATCTTCGAGATTCCTTGAAGCAGCTCGAGATTGAACTAGGTGGCTTCTCATCTCCTGATCTAGAGACTAGAATGCAGAATGTAACTTTAAGCAACTAA 1095 43.11 MGKADKERLIRTLNSHLNTIHETFQMLDQNPSSSLEKVSWDDVLKMGDQVYKQATVAGMVWTGERLEVKAIEENMASYFNMLQGFLLVSHGSKVGAGPTLSSVIHASVKQVIDSSFRLWKESVSLYGPQKNQDQNQVVPQLVGAVWDACSALKKAPSTNITAIGRAITQVAVSVKDVLREMKELKQGSSDLDKAPEESSNAVEGDSQDEGNTSDDADIGNDLSAEEMRVAQSAISVVSSILLVIKELIRSITSLLKLENANKESNLASLENLLKLCQGIGLQVDELGACLYPPQEGPAIKVASEKISSFLENMQAELGSLNGNSEGFLQACNNLRDSLKQLEIELGGFSSPDLETRMQNVTLSN 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20690243 20692947 - PI0005790.1 Cmetu10g0036 366899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0036 364 PANTHER CYCLIN D1-BINDING PROTEIN 1 3 351 IPR026907 GO:0051726
Cmetu10g0036 364 Gene3D I/LWEQ domain 155 345 - -
Cmetu10g0036 364 MobiDBLite consensus disorder prediction 185 199 - -
Cmetu10g0036 364 Pfam Grap2 and cyclin-D-interacting 42 314 - -
Cmetu10g0036 364 Gene3D Talin, central domain 3 152 - -
Cmetu10g0036 364 MobiDBLite consensus disorder prediction 185 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0036 K21626 - - csv:101213885 666.381
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g384 . . . . . . . . Cmo04g01548 . . Cma18g00987 Car04g01534 Car18g00908 Sed07g2128 Cpe09g00330 Cpe01g01318 Bhi07g01256 Tan04g0793 Cmetu10g0036 Lac13g0546 Hepe01g1151 . . . . . . . . . Cone13ag0790 . . . Lsi04g00209 Csa05g02658 Chy10g01190 Cme10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012569 0 1 1 1 1 1 2 1 1 1 1 1 3 1 1 0 1 2 1 1 1 0 1 1 1 0 0 1 1 1 29