Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0038 ATGACGGAAAACCAGAAACATGGGCTAGAATTCGATATAGACTCATCATCTCAAAGGCCCTTGAAAATTGGAAAGACCAGAGACGAAGTTTTTCACGGCGACGAGGAGGAAGCAGAAACCATGAACCCTAAACCTGGAATCCAACGCTACCTTGTCGCAGTAGAATATATTGGAACTCGGTTTTCTGGGTCTCAGCAACAGCCCAACTGCCGTACGGTGGTTGGCGCGCTCGAGGAAGCATTCCAGAAGTTTATCGGTCAACCAGTCTCGGTGTTTTGTTCTAGCAGAACTGATGCTGGAGTACATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCTGGAGAAGTGTTACCACCTCATGAACCGGGAGTGGTTCATAAGGCCGTGAATCATTTCTTACAGAAACATGAAGGTGATGTTACCGTAGTTGATGTTCGAAGTGTTCCCAATGATTTTCATGCTAGATATAAAGCTCAAGAGCGTACGTACTTTTATCGGTTAGTTTCTGGACCAGAAACTCTCTCAGGCTTTGAGAAGGATCGAGCATGGCACGTGCCTGAGACGCTAAATATTGGGGCAATGCAGGAGGCATGCAAAGTGCTGGTCGGACATCATGATTTTAGCTCCTTCAGGGCAGCTGGTTGTCAGGCAAACTCACCTATCAGAACTCTGGATGAACTAAACGTTTGTGAGGTGGCTTCAACTCCTTATTTTCCAACATCAATGGAGCGAAAGCAAAGGCAGGGCAAAGAAGAAGGTGAGAATGAAGTGCCACGTTCAGAAACTTGTGAGGTTGGATTTGGAATCAGGAGAAGGCATCGTTGTTTTGTGGTGACAGCACGAGCACGCTCTTTTCTCTATCATCAGGTGAGACTGATGGTTGGAGTTCTTAAAGCAGTCGGCACTGGAGATCTAACCGTAGAAGATGTAGAAAGAATATTGGAAGCGAAGAATGTGAGTTCAGCAAGGCCAATGGCTCCTGCGTGCGGACTCTACCTCGGCCATGTCAAATACGATCTACCGCCAGCTCCCCATTGA 1059 46.65 MTENQKHGLEFDIDSSSQRPLKIGKTRDEVFHGDEEEAETMNPKPGIQRYLVAVEYIGTRFSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPETLSGFEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTPYFPTSMERKQRQGKEEGENEVPRSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVEDVERILEAKNVSSARPMAPACGLYLGHVKYDLPPAPH 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17439258 17444437 + PI0025282.1 Cmetu10g0038 366901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0038 352 SUPERFAMILY Pseudouridine synthase 47 346 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cmetu10g0038 352 MobiDBLite consensus disorder prediction 1 42 - -
Cmetu10g0038 352 MobiDBLite consensus disorder prediction 21 42 - -
Cmetu10g0038 352 Pfam tRNA pseudouridine synthase 204 346 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cmetu10g0038 352 Pfam tRNA pseudouridine synthase 53 163 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cmetu10g0038 352 Gene3D - 45 165 IPR020094 GO:0003723|GO:0009982
Cmetu10g0038 352 PANTHER PSEUDOURIDYLATE SYNTHASE 40 345 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cmetu10g0038 352 Gene3D - 167 347 IPR020095 GO:0003723|GO:0009982
Cmetu10g0038 352 Hamap tRNA pseudouridine synthase A [truA]. 48 345 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cmetu10g0038 352 FunFam tRNA pseudouridine synthase A 46 165 - -
Cmetu10g0038 352 CDD PseudoU_synth_EcTruA 54 345 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0038 K06173 - - csv:101221274 691.804
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g264 Blo01g00018 . . Bda08g00342 . . . Bma05g00982 . . . . . . . . . . . . . . . . Cla06g00388 Cam06g0410 Cec06g0419 Cco06g0418 Clacu06g0398 Cmu06g0397 Cre06g1174 Cone14ag0674 Cone15ag0685 . . . . . . . . . . Bpe05g00791 . . . Sed06g1479 . . . . . . Cpe12g00351 . Bhi12g02002 Tan06g2820 Cmetu10g0038 . Hepe03g0005 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008478 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 34