Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0062 ATGGGTGACGTTTTGGGTGTGGATCATTTAAGCGATCTGCCTCAGAGTATTATAGAATGCATTCTAACTAGGTTACCAATTAGAGATGCTATTAGAACAAGTATTTTATCTAGGAGATGGAGATACAAGTGGAATACTCTTACTCAACTTGTGTTTGATGATGATTGCGTTGCCATGTCCAATGATGGAATTTATGAAGACCTTATATATTTTATCACTCATGTTCTTTTTCTTCATGAAGGTCCAATTCACAAGTTCCATCTCGCTGCTACTTACTTGCAGAATACCCCAGATTTAGATCAGTGGTTGCTTTTTCTTTCAAGGAAAGGCATCAGGGAATTGATTATTGAATTAGGAGATGGGGACTGGTTTAGGGTGCATTCTTGTCTTTTTAACTGTAGCAAATTGACCCTATTGGAGTTGTATCGCTGTGAATTGGATCCACCTCCTAACTTTAAGGGGTTTTTATGTTTGAAAAGCCTAAAACTTCATCAAGTTTTGATTGCACCTGAAGACATTGAAAGTCTTATTTCTAATTGTCCACTTCTTGAGAATTTGGCGCTTTCCTATTTTGATAGTCTAGTGCTTAATATCTGTGCTCCGAATCTTAAGTACCTCTATCTTGAAGGCGAGTTTAGAGACATATGTCTTCAAAACACGCCACTCTTGGTTGCAATTTCAGTTGCATTATATATGAATGATGAATCTGAGCCCTTTGGCGATATTTCTGATTGCAATTATGAAAAGTTTCTTGGTGGGGTGCCTTATCTTGAGAAACTTACAGGGCTTGTTTATTTCACGAAGTATTTGAGTATAGGTAATAGTGCAAGAACTCTGCCAGTTTCATACATCTATTTAAAGAATATTGAACTGCACCAAGTCAGCTTTGAAGATATGAATGAGATACTTGTTGTACTTCGTTTGATTACCAGCTCCCCAAATTTGGAGGAGCTTCAAATTTCGGGCTTGTCAAATCCCGTGGCTGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGTCCCTCGAACCTCATATTTGGTAAACTTAGAGTTGTGAAAGCGACAGATATGTCTGGTGTACCACACGAGATGGGATTTATTAAATATTTGCTTAGGAATTGCCCGGTACTTGAGATAATGAGTATCAGACCTTGTGTCTATGTTACTGATCGACGATTGAATATGTTGATTGAATTGTTAAAATTTAGGAGGGTTTCACCTGAAGCAGAAATTTTGTTCATCCAGGAATAG 1257 37.87 MGDVLGVDHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWNTLTQLVFDDDCVAMSNDGIYEDLIYFITHVLFLHEGPIHKFHLAATYLQNTPDLDQWLLFLSRKGIRELIIELGDGDWFRVHSCLFNCSKLTLLELYRCELDPPPNFKGFLCLKSLKLHQVLIAPEDIESLISNCPLLENLALSYFDSLVLNICAPNLKYLYLEGEFRDICLQNTPLLVAISVALYMNDESEPFGDISDCNYEKFLGGVPYLEKLTGLVYFTKYLSIGNSARTLPVSYIYLKNIELHQVSFEDMNEILVVLRLITSSPNLEELQISGLSNPVAASEAPDLDFWENECPSNLIFGKLRVVKATDMSGVPHEMGFIKYLLRNCPVLEIMSIRPCVYVTDRRLNMLIELLKFRRVSPEAEILFIQE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19951461 19952992 + PI0013219.1 Cmetu10g0062 366925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0062 418 PANTHER F-BOX PROTEIN-LIKE 8 386 - -
Cmetu10g0062 418 SMART 9598neu4hmm 344 416 IPR006566 -
Cmetu10g0062 418 Pfam FBD 351 384 IPR006566 -
Cmetu10g0062 418 CDD F-box_AtFBL13-like 10 44 - -
Cmetu10g0062 418 SUPERFAMILY F-box domain 6 62 IPR036047 GO:0005515
Cmetu10g0062 418 SUPERFAMILY RNI-like 113 405 - -
Cmetu10g0062 418 Gene3D Ribonuclease Inhibitor 87 409 IPR032675 -
Cmetu10g0062 418 ProSiteProfiles F-box domain profile. 7 68 IPR001810 GO:0005515
Cmetu10g0062 418 Pfam F-box domain 10 42 IPR001810 GO:0005515
Cmetu10g0062 418 Gene3D - 2 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0062 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2294 Cmetu-Chr4:12815324 Cmetu10g0062 Cmetu-Chr10:19951461 5.30E-12 dispersed
Cmetu05g0693 Cmetu-Chr5:6138620 Cmetu10g0062 Cmetu-Chr10:19951461 6.50E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1028 . . . . . . . . . Cmo18g01091 . . . Car18g00992 Sed06g1833 . . Bhi07g01411 Tan04g0933 Cmetu10g0062 Lac13g0428 Hepe10g1843 . . . . . . . . . . . . . . . . Cme10g00320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34