Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0076 ATGGATCCCCCGACCTCCTACCGTAGTCGTAGAACCACCAACAAATCTGACCTCTACTCCACAGTAGTTATCCATTCCAATTCCGATTCCGACTCCGACAACAACCCCGACCATCGGAATCCTCACCGTCGACCAAGGCCACCGACCGAAGGACAAGACCTTTACGCCACAATGCTCTACAAGGATGTTGATAAGCCTCGGGATGAAGACGATGACGATGATTCTTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGTGGAGCCCCAATTGACTACGAGGATGACGATGCTTTTGATTTTGATCACGAAACTGAAGACTTCGGTACCATGATCGTCAAGACGGATAGGAATCGTCCTCGTAATCGCTCTGTGTCTTCTTCAGTTTCCACCAAGCCTCGAACTTCGCCGTTGCCGTTTGTGAACTTTCAGCAGGGGAGCCCCGGGAAGAGAGGTGGTAGTGAAGAAGGCGAGGATAGTGAGGAGGAAGATGATGGTGATGGATATTCTACGTTTGTGGTGAGGTCGACGGCGAGGTCGCGGAACAGAGAATCGGTTAGTGGGACTGTTGTTCGAAGGACTGGTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGATGGGTCCACCATGGGCAGAGCGGTGGCAAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAACAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAGGGCGGTGGTCGGATACGCAGTAAGGTTTCGTCCAGTTCGATTCCAGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAATGAACTTGGAAAGGGGTCCTATGGAGCTGTATATAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTTTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCACTGAAGGGTCTCACTTATCTTCATTCAATATTCAAAGTTCATAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGGAAGGTGGATGTGTGGGCCCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCTGCAGTGCATCCAATGAGGGTTTTATTCATGATATCAATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCATGACTTTGTCGCCAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAACAAGCACATAGTATTGCTCCAGATGCGTCAGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATGTTGGACTTCAGGTAGCAAGTGAAATGGCAGCTGGCGGCACTTGGAGAAAGCAAGAGCAATCAGGCGCTGAACTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATGGGCATTGCTGAACCACCAACTGGTTCCTTACGCAATGAGAGCCTATCCATTAACGTAACTAGAGTTGACTCTAGTGTGCGTACAGGGGGAATTGTAAATAATATTCTTGATGGAAAATCGGATCCCACCGTGCCTGCATCTTTACCTACATTTTTGGGTATTCATGAGCTTAGCACATTGAAGAGTGAAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTGCCCATTCCATTCTTGAGGGCTACTGATATATCCCCCATTGCTTTGTTATCTGACAACGTCCTTGGAGGCGTGCAGCACGGTACTGTAGCTGTGGAAACGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGTAGGGGACAAAACGAGATGCCTCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCACTTCAAGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGATTGTAG 2514 46.62 MDPPTSYRSRRTTNKSDLYSTVVIHSNSDSDSDNNPDHRNPHRRPRPPTEGQDLYATMLYKDVDKPRDEDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDDAFDFDHETEDFGTMIVKTDRNRPRNRSVSSSVSTKPRTSPLPFVNFQQGSPGKRGGSEEGEDSEEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRTGGSRSGSRDGGGGLDGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNVGLQVASEMAAGGTWRKQEQSGAELVAEGTFGTVIVHDGDENDKVASQLDMGIAEPPTGSLRNESLSINVTRVDSSVRTGGIVNNILDGKSDPTVPASLPTFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7068931 7099289 + PI0026499.1 Cmetu10g0076 366939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0076 837 ProSiteProfiles Protein kinase domain profile. 272 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu10g0076 837 ProSitePatterns Protein kinases ATP-binding region signature. 278 301 IPR017441 GO:0005524
Cmetu10g0076 837 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 255 565 - -
Cmetu10g0076 837 Pfam Protein kinase domain 272 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu10g0076 837 CDD STKc_MAP4K3_like 271 526 - -
Cmetu10g0076 837 MobiDBLite consensus disorder prediction 107 124 - -
Cmetu10g0076 837 MobiDBLite consensus disorder prediction 176 199 - -
Cmetu10g0076 837 FunFam serine/threonine-protein kinase dst1 isoform X1 269 559 - -
Cmetu10g0076 837 SMART serkin_6 272 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu10g0076 837 MobiDBLite consensus disorder prediction 1 268 - -
Cmetu10g0076 837 MobiDBLite consensus disorder prediction 125 152 - -
Cmetu10g0076 837 FunFam Aurora kinase A 264 353 - -
Cmetu10g0076 837 MobiDBLite consensus disorder prediction 31 49 - -
Cmetu10g0076 837 MobiDBLite consensus disorder prediction 1 30 - -
Cmetu10g0076 837 SUPERFAMILY Protein kinase-like (PK-like) 269 527 IPR011009 -
Cmetu10g0076 837 Gene3D Transferase(Phosphotransferase) domain 1 268 561 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0076 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0076 Cmetu-Chr10:7068931 Cmetu12g2117 Cmetu-Chr12:41199 1.40E-30 dispersed
Cmetu04g3192 Cmetu-Chr4:10644892 Cmetu10g0076 Cmetu-Chr10:7068931 2.60E-49 transposed
Cmetu06g0753 Cmetu-Chr6:30282248 Cmetu10g0076 Cmetu-Chr10:7068931 1.40E-50 transposed
Cmetu07g0934 Cmetu-Chr7:21866751 Cmetu10g0076 Cmetu-Chr10:7068931 6.10E-67 transposed
Cmetu09g0153 Cmetu-Chr9:18993542 Cmetu10g0076 Cmetu-Chr10:7068931 5.70E-54 transposed
Cmetu10g0076 Cmetu-Chr10:7068931 Cmetu11g2191 Cmetu-Chr11:12783188 1.00E-20 wgd
Cmetu10g0076 Cmetu-Chr10:7068931 Cmetu11g0687 Cmetu-Chr11:7764164 1.00E-23 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0934 . 1 693 MAP Kinase Kinase Kinase Kinase AT1G53165 63.1 3.9e-223 771.5
Cmetu10g0076 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.5e-67 253.4
Cmetu07g0934 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 1.7e-231 799.3
Cmetu10g0076 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.6e-67 254.6
Cmetu10g0076 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 1.8e-240 829.3
Cmetu07g0934 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 3.2e-67 253.8
Cmetu09g0153 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 1.5e-251 865.9
Cmetu06g2431 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.1 2.2e-93 340.5
Cmetu06g0753 . 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 4.1e-247 851.3
Cmetu06g0753 . 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 8.6e-247 850.1
Cmetu04g3192 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 2.7e-132 469.5
Cmetu06g0753 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.0 1.0e-118 424.5
Cmetu04g3192 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 2.6e-216 748.8
Cmetu09g0153 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.8e-102 370.2
Cmetu04g3192 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 6.3e-87 318.5
Cmetu06g0753 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 5.5e-75 278.9
Cmetu06g2431 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 1.0e-140 497.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70758 PF00069 Pkinase 7.60E-68 CL0016 Cmetu PK