Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0115 ATGAACGCCTCTCGCACGTGCTCCCTCTGCGGGAACAACGGCCACAACTCCCGCACGTGCCCGGAAGCCGACGGCACCGGCGGATTCATGTTGTTCGGAGTTAGACTAACGACGTCGGAGGGAAGTAAGTCGTTTAGGAAGAGCGTTAGTATGAATAATCTGTCACAATACGCAGAGCATCCTCCAAGTCAAGACTCCAACCACGCCGATGCCGGATATGCTTCCGACGACGTCGTTCACCCGTCGGACCGTTGTGGCGGCCGGAAGAGAGGGATTCCGTGGACGGAGGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAAGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACACGTACACCGACTCAGGTTGCAAGTCATGCTCAGAAATATTTTCTCCGACGGAATAATTTTAATCGGCGACGCCGTAGATCCAGTCTTTTCGATATCACTACTCACACCTTCACGAGCTCATCCAAGGAAGACGACTTGATATTTTCCGGTCACGAGGCAATGCAGCCACCGCTGCCACCGTCACCGCCCCAAAAAGACAATACTCCGGGAAATTTCCCGGTGAAAATTCATCCAGCGAAACTACCTCCAGCCGCCGTGGCCAGCGGCGTCGTTGATAGCAAAGCCGTAGAGAGTACAATAACACTAAATTCATCAAATTATCCGGCAAAGCCATGCAATTCCAAAATCATTCGTACAATTCCAATGCTTCCTCTATCTCCATACCCAAAATTTGCCGAATTAAACATTAACGAGAGAATCCCAGAAGACCCTTTGCCTCTAACTTTAAAGCTCTCAACTTCACACTCGGAGGGACAGTCACCGGCGGTGGCTTCACAGTCGTCCGGCAGTTTCCAGACATTGTCCGGCGGCGGAGACAGCATAGACATTGTCAGTGTTGCTTGA 936 50.85 MNASRTCSLCGNNGHNSRTCPEADGTGGFMLFGVRLTTSEGSKSFRKSVSMNNLSQYAEHPPSQDSNHADAGYASDDVVHPSDRCGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITTHTFTSSSKEDDLIFSGHEAMQPPLPPSPPQKDNTPGNFPVKIHPAKLPPAAVASGVVDSKAVESTITLNSSNYPAKPCNSKIIRTIPMLPLSPYPKFAELNINERIPEDPLPLTLKLSTSHSEGQSPAVASQSSGSFQTLSGGGDSIDIVSVA 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18972566 18975175 + PI0016004.1 Cmetu10g0115 366978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0115 311 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Cmetu10g0115 311 Gene3D - 92 144 - -
Cmetu10g0115 311 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
Cmetu10g0115 311 ProSiteProfiles Zinc finger CCHC-type profile. 7 22 IPR001878 GO:0003676|GO:0008270
Cmetu10g0115 311 ProSiteProfiles Myb-like domain profile. 93 138 IPR001005 -
Cmetu10g0115 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Cmetu10g0115 311 MobiDBLite consensus disorder prediction 56 91 - -
Cmetu10g0115 311 FunFam transcription factor MYB1R1 92 143 - -
Cmetu10g0115 311 CDD SANT 93 137 IPR001005 -
Cmetu10g0115 311 SMART sant 90 140 IPR001005 -
Cmetu10g0115 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Cmetu10g0115 311 MobiDBLite consensus disorder prediction 272 303 - -
Cmetu10g0115 311 PANTHER TRANSCRIPTION FACTOR KUA1 5 237 - -
Cmetu10g0115 311 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Cmetu10g0115 311 MobiDBLite consensus disorder prediction 273 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0115 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1609 Cmetu-Chr7:2669800 Cmetu10g0115 Cmetu-Chr10:18972566 2.90E-07 dispersed
Cmetu10g0115 Cmetu-Chr10:18972566 Cmetu10g1602 Cmetu-Chr10:16973293 2.40E-23 dispersed
Cmetu01g0426 Cmetu-Chr1:29127523 Cmetu10g0115 Cmetu-Chr10:18972566 2.30E-38 transposed
Cmetu02g0606 Cmetu-Chr2:1963439 Cmetu10g0115 Cmetu-Chr10:18972566 1.10E-30 transposed
Cmetu03g2033 Cmetu-Chr3:621990 Cmetu10g0115 Cmetu-Chr10:18972566 5.10E-28 transposed
Cmetu06g1877 Cmetu-Chr6:28852505 Cmetu10g0115 Cmetu-Chr10:18972566 6.80E-40 transposed
Cmetu07g1658 Cmetu-Chr7:3461775 Cmetu10g0115 Cmetu-Chr10:18972566 1.20E-31 transposed
Cmetu10g0115 Cmetu-Chr10:18972566 Cmetu12g1423 Cmetu-Chr12:2221420 2.10E-35 wgd
Cmetu10g0115 Cmetu-Chr10:18972566 Cmetu02g0204 Cmetu-Chr2:23979168 1.00E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8588 PF00249 Myb_DNA-binding 1.80E-10 CL0123 Cmetu TF