Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0150 ATGACTTCCGGCGGCGGCGGCGAGGTTGAAGTCAAGGGAGTGTTTATAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTAGTGGCTTTTGGCGCTCAAAACGCCGTTGCAATCTTCTCTCCTAAGTCTGCACAAATTTTGACTACTCTTCCCGGTCACAACGCCTCTGTGAACTGTACTCATTGGCTTCCAAGTAACAAGTTTTCGTTTAGAGCCAAGCAATTCAAGTCTCATTTTCTACTTTCTGGTGACTCTGATGGTGCCATTCATTTATGGGAGTTGTCTCTTCTGGACCAAAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCATCACATGTATTGCTGCACATGTAATTTCTGAAACAGTAGCAATTTTTGCGTCTTCTTCTTCAGATGGTTCAGTTTGTGTTTGGGAGGTTGCTTTTCCGTCCACCAATGAAGGTGATTGTACATTGTTGTTGCTGGACACGCTCGTGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGTCGGCCGTATGGTCCTGGCTATGGGAGGCTTGGATAATAAGATTCATCTGTATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAGCTCAAAGGGCATACAGATTGGATTAGAAGTTTGGACTTCTCTTTGCCTATGGGGAAAAATGGAGAAGCAAACAACATTATGCTTGTGAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGCTTTTCATGGTTCCTCAGCCAACATAAATGGAGGATGCAAGAAAGAAGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCCGGACTATTGACTTACCAGGTATCATTAGAGTCACTTTTGATTGGTCATGAGGATTGGGTATATTCGGTCCAATGGCAGCCGCCTTCAGCTTCAGAAACAGAAGGGGTTGCATATCAGTCTGAAAGCATCCTATCTGCATCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAATTAAGTCATTGTGCTCTAGGGTTTTATGGTGGGCATTGGGGCCCTAATGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAGAAATGTTGGTACCAGTTCAGATAACTGGAAACCTCAAAAAGTTCCCTCAGGACATTTTGCTGCTGTCATGGACATTTCATGGGCCAGATCTGGTGATTATATAATTTCAGTCAGCCATGACCAGACAACTCGGATTTTTGCTCCCTGGAAAAGTGTCAATTCTCTTGAAGGAGCTTCTTGGCATGAAATTGCTCGACCTCAAGTTCATGGTCATGATATTAATTGTGTCACCATAATACAAGGGAAGGGGAACCATCGCTTTGTGAGCGGAGCTGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTTTGAAGACATTGAGTCATGCCACCCTGCAGAACTTTGTGGCCACCGAAGATCACCTTGTGGATGTTCAGATTTTGGGTGCTAATATGTCGGCTCTTGGCCTTTCACAGAAACCTATTTATGTTCAATCTGCTGATAAGACACCAGACAGGAGTGGAAATGAAGGCATTGACACCCTTGAAACCGTTCCCGATGCAGTTCCTGTCATTCTTACTGAACCTCCCATTGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTATGTTGTGATAACAAGGGGAAGCTAGTTGCTTCATCCTGCAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCATGGAAGGCAGTCGGTCGTTTGCAATCTCACAGCTTAACAATAACGCAAATGGAGTTTTCCAATGATGACAGTATGCTATTGGCAGTCTCGAGGGATCGCCAGTTCTCTGTTTTCAAAATCCACAGAACAGGCTCTGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGCTCTTGGAACCCACATGGTCGTGAGTTTGCAACTGGCTCTAGGGATAAGACTGTGAAGATATGGGCTGTGACACCTGAATCTTCAGTTAAGCAGCTAACAACACTATCACAGTTCAAATCTAGTGTCACTGCTTTATCGTGGGTCGGTCTCGACTCCAAGAGCAATGGATTCCTTGCAATTGGAATGGAAAATGGCCTTCTTGAGTTGTGGAATTTGTCTATTAAAAGAACAGATAACATTTACTCAAATGTAGTTGCTTCGGTCGCTATACGTCTGGATCCATTTGTGTGCCATGTTTCCTCGATCAACCGTTTGGCGTGGAAGGAACCGGAGAAGAGTGGTGAAGAGTGCAGCAAGCTGCAGTTCGCATCCTGTGGCACTGACCACTGTGTTAGAGTGTTTGAGGTAAATGTTTCTGTATGA 2517 43.78 MTSGGGGEVEVKGVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKFSFRAKQFKSHFLLSGDSDGAIHLWELSLLDQKWRNVLQLPKSHKKGITCIAAHVISETVAIFASSSSDGSVCVWEVAFPSTNEGDCTLLLLDTLVVGSKSMVALSLAELPGNVGRMVLAMGGLDNKIHLYCGKRTGEFVKACELKGHTDWIRSLDFSLPMGKNGEANNIMLVSSSQDRGIRIWKMAFHGSSANINGGCKKEEISLTSYIQGPIFTAGLLTYQVSLESLLIGHEDWVYSVQWQPPSASETEGVAYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWGPNGDSILAHGYGGSFHLWRNVGTSSDNWKPQKVPSGHFAAVMDISWARSGDYIISVSHDQTTRIFAPWKSVNSLEGASWHEIARPQVHGHDINCVTIIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLQNFVATEDHLVDVQILGANMSALGLSQKPIYVQSADKTPDRSGNEGIDTLETVPDAVPVILTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDNKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSNDDSMLLAVSRDRQFSVFKIHRTGSDEIHHELISRQEAHRRIIWSCSWNPHGREFATGSRDKTVKIWAVTPESSVKQLTTLSQFKSSVTALSWVGLDSKSNGFLAIGMENGLLELWNLSIKRTDNIYSNVVASVAIRLDPFVCHVSSINRLAWKEPEKSGEECSKLQFASCGTDHCVRVFEVNVSV 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20595768 20601231 + PI0011883.1 Cmetu10g0150 367013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0150 838 Gene3D - 683 837 IPR015943 GO:0005515
Cmetu10g0150 838 Pfam WD domain, G-beta repeat 114 149 IPR001680 GO:0005515
Cmetu10g0150 838 Pfam WD domain, G-beta repeat 52 99 IPR001680 GO:0005515
Cmetu10g0150 838 Pfam WD domain, G-beta repeat 405 442 IPR001680 GO:0005515
Cmetu10g0150 838 Pfam WD domain, G-beta repeat 690 719 IPR001680 GO:0005515
Cmetu10g0150 838 Pfam WD domain, G-beta repeat 218 259 IPR001680 GO:0005515
Cmetu10g0150 838 Pfam WD domain, G-beta repeat 304 347 IPR001680 GO:0005515
Cmetu10g0150 838 FunFam Elongator acetyltransferase complex subunit 2 366 678 - -
Cmetu10g0150 838 SUPERFAMILY WD40 repeat-like 685 834 IPR036322 GO:0005515
Cmetu10g0150 838 Gene3D - 575 678 IPR015943 GO:0005515
Cmetu10g0150 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 688 719 - -
Cmetu10g0150 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 260 IPR001680 GO:0005515
Cmetu10g0150 838 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 36 725 IPR011047 -
Cmetu10g0150 838 ProSitePatterns Trp-Asp (WD) repeats signature. 87 101 IPR019775 -
Cmetu10g0150 838 PANTHER ELONGATOR COMPLEX PROTEIN 2 12 836 IPR037289 GO:0002098|GO:0033588
Cmetu10g0150 838 SMART WD40_4 455 496 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 585 629 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 681 720 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 107 150 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 786 833 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 297 347 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 404 443 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 50 100 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 212 259 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 632 671 IPR001680 GO:0005515
Cmetu10g0150 838 SMART WD40_4 726 769 IPR001680 GO:0005515
Cmetu10g0150 838 Gene3D - 401 526 IPR015943 GO:0005515
Cmetu10g0150 838 Gene3D - 288 400 IPR015943 GO:0005515
Cmetu10g0150 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 688 729 IPR001680 GO:0005515
Cmetu10g0150 838 PRINTS G protein beta WD-40 repeat signature 87 101 IPR020472 -
Cmetu10g0150 838 PRINTS G protein beta WD-40 repeat signature 707 721 IPR020472 -
Cmetu10g0150 838 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Cmetu10g0150 838 Gene3D - 24 283 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0150 K11374 - - csv:101209018 1635.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30