Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0234 ATGGATGTTCCCGAGGTTGAAGAAATATTTTTGCTGCCGTTACATGGAGAAATGTACAAGAAGCTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCAGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGGCTAAGAACACTCTTCGGCATTGCTCAGAATCCAGTAAACTCTACTTGGCAATAACTGGAGATGCTGTTCAAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTCTCGCAATCAATTGGATTTCAGATTCAGCAGATAGTGAATGAACTCAAGGACACTGTTTTCTTACTTGACCCACTTGAAAAACAAGTTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAACGGCCACAATGAGCTGGAGCATTTTCATCAGGCTGCCACAAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTCGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTATCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTAGCAGATGACAATGACTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCACTTGAGGATAATGGACTTGCAGCAAATGGTCAAGTCTTTGAACAGCAGCTTTCAAAGCTTAGTTCTTTCAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAGTTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCGAAGACTCAACAGAGACTCTCCCACCTGTCTTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAGTTGGTGTGAACATAACGGAGTTCCAATCCTGGATGGCCCACCAAAGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAATCTGGAAAATCACGATCTGTGGATAATGTTGGCTCTAACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAATGTTGCTGAAGGAAATGAAGCAGATGATAATACATACATGGAGGAGTCATCAGATTTTATTACACTTGAAAGTTGTGGAGATTTGAGGAAAAAATGTAAGGTTGTGGAGCAAATAAGACTTTCATTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGTTTTGCTGAAGCACTTATGGACTTCCTAACTTTAGCTCTTATTGAAGAAAATGCTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATAGCGGCAGGCGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCAACAGCCCTATATCTGAATCTTTCCTGCCTAGAAGATGCTAAACCTATCATTAGTTCAAGTACAGCGGTTCCTTTCCTGATCCAGCTGCTTACTTGTAATGACGAATCCCAAACCAAGCTCGATGCGCTTCATACCCTATATAACCTTTCAACCACACCTTCCATCATTCCCGTTCTTCTTTCCGCTGGTATTGTTGGCGGACTTCAATCCTTCCTCACATCGCCTAGTGACAGCATGTGGACAGAGACTTCCTTAGCTATCTTAATGAACTTAGCTTCAAGCCAGTTGGGGATAGAAGAAATAACTTCAGCCCCGGAGCTTATAAGTGGATTAGCAGCCATCGTTGATGCTGGGGAACGTGCTGAGCAGGAGCAAGCGGTATCATGCTTGTTGGTTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTTATTCCGGGATTGGTTGCGATTACGGTAAATGGGACTTCGAGAGGGAAAGTAAAAGCGCAAAAACTTCTTATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCATTCAACAGCGAGATGGAAATAGTGACACAGCCATAGCTGCTCCAGATCCTAAGCCACTATGCAAATCAGTGTCGAAGAAAAAGATGGGGAAAGCGCTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTATACCAATGTTGA 2262 42.04 MDVPEVEEIFLLPLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVQAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELADDNDSQGGSTPCSPTVRCSLEDNGLAANGQVFEQQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQRLSHLSLTPNYSVKGLIASWCEHNGVPILDGPPKSLDLNYWRLALSDSESGKSRSVDNVGSNTLKEVKVVPLEESGTINVAEGNEADDNTYMEESSDFITLESCGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMDFLTLALIEENADAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTCNDESQTKLDALHTLYNLSTTPSIIPVLLSAGIVGGLQSFLTSPSDSMWTETSLAILMNLASSQLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLVLCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDIIQQRDGNSDTAIAAPDPKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17835446 17839381 + PI0000307.1 Cmetu10g0234 367097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0234 753 Gene3D - 401 709 IPR011989 -
Cmetu10g0234 753 PANTHER U BOX DOMAIN-CONTAINING 24 699 - -
Cmetu10g0234 753 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Cmetu10g0234 753 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Cmetu10g0234 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 349 IPR013083 -
Cmetu10g0234 753 Pfam U-box domain 277 346 IPR003613 GO:0004842|GO:0016567
Cmetu10g0234 753 SMART arm_5 492 530 IPR000225 GO:0005515
Cmetu10g0234 753 SMART arm_5 531 572 IPR000225 GO:0005515
Cmetu10g0234 753 SMART arm_5 446 490 IPR000225 GO:0005515
Cmetu10g0234 753 SUPERFAMILY ARM repeat 428 683 IPR016024 -
Cmetu10g0234 753 FunFam RING-type E3 ubiquitin transferase 275 349 - -
Cmetu10g0234 753 SUPERFAMILY RING/U-box 270 351 - -
Cmetu10g0234 753 CDD RING-Ubox_PUB 277 329 IPR045210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0234 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0234 Cmetu-Chr10:17835446 Cmetu12g0678 Cmetu-Chr12:5805784 3.10E-32 dispersed
Cmetu07g1864 Cmetu-Chr7:4589170 Cmetu10g0234 Cmetu-Chr10:17835446 9.30E-74 transposed
Cmetu09g0528 Cmetu-Chr9:11816572 Cmetu10g0234 Cmetu-Chr10:17835446 7.10E-09 transposed
Cmetu11g1660 Cmetu-Chr11:18624910 Cmetu10g0234 Cmetu-Chr10:17835446 2.50E-19 transposed
Cmetu10g0234 Cmetu-Chr10:17835446 Cmetu03g0640 Cmetu-Chr3:486663 3.80E-224 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1184 Blo01g00365 Blo16g01194 . . . Bpe10g00785 . Bma15g00238 Cmo04g01920 Cmo18g00698 . Cma18g00710 . Car18g00655 Sed06g1738 Cpe09g00579 Cpe01g01608 Bhi07g01900 Tan04g0075 Cmetu10g0234 Lac13g0067 Hepe10g0096 . . . . . . . . . Cone13ag1136 Cone19ag1117 Cone8ag0740 . Lsi04g00666 . . Cme10g00643 Blo06g00829 . . . . . Bma01g00018 Bma06g00574 . . . Cma04g01823 . Car04g01836 . . . . . . . . . . Cla11g01354 Cam11g1412 Cec11g1438 Cco11g1436 Clacu11g1569 Cmu11g1389 Cre11g1810 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010076 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 4 0 33