Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0245 ATGGTCGGTAATTTCTTCGAGCTCGGTCCATGGCGGGTCAATTTTCACAAACAAAAAACCGAACCCATTTCCCTAATCCCCAATCCCGGCTCATGGAACCGAAGATTCGGCCTCCTATTTCTCGACAACCCAATTGGAACTGGCTTCAGCATTGCTACAACCAAAGATGAGATCCCCAAAAACCAATACTCTGTTTCTAGGCATCTTTTTACAGCAATTTCATCGTTTATTGAGCTTAACTTAGCGTTTAAGAATCGACCCATTTACATTACAGGGGAAAAAAACCCCAAATTACCTTATGATAAAAGGGTTAATTTGGTTGGTGTTGCCATTGGAGATGGGTTAACAGATCCCATTACTCAAGTTGCTACTCATGGATTGAATGCTTTTTATTCAGGTTTGATTAATGAAAAGCAAAAAAAGGAGATGGAGGTTGCCCAAGTGGAAGCTGTGGAGTTGATCAAATTGGGGAAATGGAGTGAGGCTACAAATGCAAGAATTAAGGTATTGGATTTGCTCAAGAACATGACTGGTTTGGCTACTTTGTATGATTATACCAGAAAATTTCCTTATAATACTGATTTAGTGGATGAGTTTTTGAGTTTCAAGGAGGTAAAAAGAGCTTTGGGAGTTAATGACTCTATGGTTTTTGAAGGGTGTAGTGATGTTGTTGGGGAAGTTTTGAATGACGATGTGATGAAGAGTGTGAGATATAAAGTTGATTTTTTGATTAAGAATAGTAAGGTTTTGCTTTATCAAGGGCAATATGATTTGAGAGATGGTGTGGTTTCAACTGAGGCTTGGGTTAAGAAGTTGAAATGGGAAGAGATTGAGAATTATTTGGGAGTTGATAGAAAGATTTGGAGAGTTGGTGATGAGTTAGCTGGTTATGTTCAAAAGTGGAAGAGTTTAAGTAATGTTGTTGTGTTGGGAGCTGGTCATCTTCTTCCAACTGATCAAGCTTTGAATTCTCAAGCAATGATTGAAGATTGGGTTTTGGAGAAAGGTGTTTTTAGTGATGATGATAATAATGATGCACAAGTGAAGAAGCCTTTTAGTTTTAACGATTTTGGGGCTTGGTGA 1083 38.32 MVGNFFELGPWRVNFHKQKTEPISLIPNPGSWNRRFGLLFLDNPIGTGFSIATTKDEIPKNQYSVSRHLFTAISSFIELNLAFKNRPIYITGEKNPKLPYDKRVNLVGVAIGDGLTDPITQVATHGLNAFYSGLINEKQKKEMEVAQVEAVELIKLGKWSEATNARIKVLDLLKNMTGLATLYDYTRKFPYNTDLVDEFLSFKEVKRALGVNDSMVFEGCSDVVGEVLNDDVMKSVRYKVDFLIKNSKVLLYQGQYDLRDGVVSTEAWVKKLKWEEIENYLGVDRKIWRVGDELAGYVQKWKSLSNVVVLGAGHLLPTDQALNSQAMIEDWVLEKGVFSDDDNNDAQVKKPFSFNDFGAW 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8031521 8032650 + PI0011994.1 Cmetu10g0245 367108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0245 360 Gene3D alpha/beta hydrolase 1 348 IPR029058 -
Cmetu10g0245 360 SUPERFAMILY alpha/beta-Hydrolases 1 332 IPR029058 -
Cmetu10g0245 360 Coils Coil 136 156 - -
Cmetu10g0245 360 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 2 320 IPR001563 GO:0004185|GO:0006508
Cmetu10g0245 360 Pfam Serine carboxypeptidase 1 332 IPR001563 GO:0004185|GO:0006508
Cmetu10g0245 360 PRINTS Carboxypeptidase C serine protease (S10) family signature 304 317 IPR001563 GO:0004185|GO:0006508
Cmetu10g0245 360 PRINTS Carboxypeptidase C serine protease (S10) family signature 41 51 IPR001563 GO:0004185|GO:0006508
Cmetu10g0245 360 PRINTS Carboxypeptidase C serine protease (S10) family signature 28 40 IPR001563 GO:0004185|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0245 K09645 - - csv:101205133 673.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0245 Cmetu-Chr10:8031521 Cmetu12g1545 Cmetu-Chr12:19097906 8.20E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g424 . . . . . . . . . . . . . . Sed06g0201 . . Bhi07g00299 Tan04g1602 Cmetu10g0245 . Hepe01g0476 . . . . . . . . . . . . . Lsi04g01160 . . Cme10g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011448 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 31