Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0277 ATGGATTTCGTCGATAATTTTCTGGATATTCGAGTCGGAATGGATTTGAGTAACTATGCTGATGCTTTGGATCGAGAACGCCAAAAAATTCAAGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTCGTCACCAGAGCTATTGATTCTTGCCGGCAGCAGTTATCTGGGGTGTCGACAGAGAGCTCTGAACATACTTCAAGCGATCGCCCTGTTTTGGAGGAGTTTATTCCTATTAACAAACCTTCTGTGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCAGGGAAATTTGAATTGGGTCGATCGGATTGGCTCAAATCGGCTCAGCTTTGGAATCAATCACCAGATCCTCCTGTTACAGTGGATGTTGCTAAGGAAACGACGTCGTCGGTTGTTGAGGTAAAAAAAAAAGGCAGTGGCGGTGCTTTTCAACCATTTGAAAAAACAACTCCATTGAAAACAGAGTCGGCGGTGGTAGTCGGTAAAATGGCCGGTTCTTCTCCAATTCCGGAGGCGACGACGAGTTCGACGGCGGAAACCGCTTCAAAATGTGGCGGAGGAGCTAGTAAACGAGAAGATAAGGAATCTCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCAGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCATGTTGCTACACCAAAACAAATCAGAGAGTTAATGAAGGTCGATGGACTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCAGCAATGCAAGACAGCGGCAGCTCATCTGCGCACCAGCAATTCGTGGTGGTCGGAAGCATATGGGTTCCACCTCCACCTCCACCGAAATACACGGTGGCAACGACAGCGAAAGCCAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTACAACTGCAGACGACGGTAGAGGAAGGAAAAGGAAAGGCGAGCCACAGCGGGGGAATGGTTCATTCAAATTCGCCTGCTACGTCTTCCTGCACCCACACCACCACAAATTCGCCGTCGGCGTAG 1074 48.32 MDFVDNFLDIRVGMDLSNYADALDRERQKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDRPVLEEFIPINKPSVNSHFEIEEDEQSKPGKFELGRSDWLKSAQLWNQSPDPPVTVDVAKETTSSVVEVKKKGSGGAFQPFEKTTPLKTESAVVVGKMAGSSPIPEATTSSTAETASKCGGGASKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAHQQFVVVGSIWVPPPPPPKYTVATTAKARNGIYAPVATAVQLQTTVEEGKGKASHSGGMVHSNSPATSSCTHTTTNSPSA 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20208522 20210457 + PI0003422.1 Cmetu10g0277 367140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0277 357 Gene3D - 204 261 - -
Cmetu10g0277 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Cmetu10g0277 357 MobiDBLite consensus disorder prediction 190 209 - -
Cmetu10g0277 357 MobiDBLite consensus disorder prediction 324 357 - -
Cmetu10g0277 357 MobiDBLite consensus disorder prediction 334 357 - -
Cmetu10g0277 357 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Cmetu10g0277 357 MobiDBLite consensus disorder prediction 172 187 - -
Cmetu10g0277 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 324 IPR044787 GO:0003700|GO:0006355
Cmetu10g0277 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Cmetu10g0277 357 Coils Coil 16 36 - -
Cmetu10g0277 357 FunFam Myb family transcription factor 204 262 - -
Cmetu10g0277 357 MobiDBLite consensus disorder prediction 170 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0277 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0038 Cmetu-Chr5:1036085 Cmetu10g0277 Cmetu-Chr10:20208522 1.40E-39 dispersed
Cmetu08g0611 Cmetu-Chr8:19469438 Cmetu10g0277 Cmetu-Chr10:20208522 1.70E-31 dispersed
Cmetu10g0277 Cmetu-Chr10:20208522 Cmetu11g1909 Cmetu-Chr11:26810430 1.70E-36 dispersed
Cmetu10g0277 Cmetu-Chr10:20208522 Cmetu03g2101 Cmetu-Chr3:16387252 2.70E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8596 None None None None Cmetu TF