Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0294 ATGGGTAAGGTTTCACATTTGGTGATAGGTCCAAATCGATCTGACAATGATAATAATAAAAAAGCGAATAGATTCCAGAGCCAGAATATAAAATTATTTTTCATACAGCACTTTCACTACTTCTATCGGAGGCTCCACTTGTACCACACTACGAGTCAATGTGTTCGCGCTTCACAATCACCATACTTCATTTTCCTTCCCATTTCAACAAGCTTTGCATCTGAAAAACAACCATCCAACCACCTTCTTCCTCATTGTGCGGTAGTGACGAAAAGAATGAAGCTGAGTCCAAAGGAGTTGGATAAGCTAGGTTTGCATAATGCGGGATTTCTAGCACAGAAGCGTCTTGCTCGTGGTTTGAGGCTGAATTACACTGAAGCTGTTGCACTTATTGCCACACAGATTCTGGAGTTTGCGCGCAATGGTGACAAGAGCGTGGCAGAATTGATGGAATTGGGACCGAAACTCTTAGGAAGGAGACAAGTTCTTCCAGCTGTTCCCCATCTTGTGGACTCTGTGCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAGTCACAGTTCATAATCCCTTTGAAGAAGAAAATGGGAACCTAGAACTCGCATTGGAGGGTTCTTTTCTTCCAGTTCCTTCACCAGAAAAGTTCCCTTTGATGGAAAGTAGTGTGGTGCCTGGTGAGATTATCTGTCCAAATGATAAGATTTCAATTAATGTTGGACGGAAAGCTGTTAGACTCAGTGTAGTCAATAAGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCACTTTATTGAGGTGAATCCTTCCTTGGTTTTCGATCGATCAAAAGCTTATGGAATGCGCCTCAACATTTCAGCAGGATCGGCTACACGGTTTGAGCCAGGGGATCCAAAATCTGTCACACTAGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAATGGCATTGCCGATGGTCCAGTTGATAGTTCCAAATTGAAAGATGTGATGGAAGCTGTGCATGCAAGAGAATTTGCACACGTGGAAGAAAACAATGCTAGAGAAGGTATAGCTGGAATAGATGATGAATTCACCACTAGACTTTCTCGTGAGGATTATGCCAACCGGTATGGTCCTACCACTGGCGACAAAGTTCGACTTGGTGACACAGATTTATATGCAGAAATTGAGCATGATTTCTCCGTTTATGGAGATGAGTGTGTATTTGGAGGTGGAAAGGTTATTAGAGAGGGAATGGGCCAATCCTGTGGGCATCCACCGGCTTTGTCCCTTGATACTGTAATAACCAATGCAGTTATCATTGATCACTGTGGAATTTTCAAGACAGATATTGGTATCAAAGATGGCTTCATTATGACCCTTGGAAAAGCTGGAAATCCTGATGTCATGGATGGTGTTTTTCGTGACCTGATTATTGGGGCTAATACTGAGGTTATTGCTGGAGAAGGATTACTTGTTACTGCAGGGGCTATAGATTGTCATGTGCATTTCATATGCCCTCAACTGGCATATGAAGCAATATCAAGCGGCATCACAACACTGGTGGGAGGTGGAACTGGGCCTGCCGCAGGAACTTGTGCTACTACTTGCACCCCATCTCCAGTGCAGATGAGGATGATGCTGCAATCAACTGATGACCTCCCCTTGAATTTTGGCTTTACAGGAAAAGGGAACAGTTCGAAGCCAGATGAGCTGTATGACATAGTGCGTGCTGGAGCAATGGGGCTGAAGCTACATGAAGATTGGGGAACTACTCCTGCTGCAATTGACAATTGTTTAACTGTGGCAGAAAAATATGACATTCAGGTGAATATTCACACTGACACTCTGAATGAATCTGGATTTGTGGAACATACAATTGCAGCTTTTAAGGGAAGAACTATACACACGTACCACAGCGAAGGAGCTGGAGGTGGTCATGCTCCAGATATTATTCGAGTGTGTGGTGTGAAAAATGTGCTGCCTTCATCAACTAATCCTACACGACCATTCACAATGAATACTGTAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTCGATCGCAATATTAAAGAAGATGTAGCTTTTGCGGAATCAAGGATAAGGAAGGAGACAATTGCAGCAGAAGATATTTTGCATGATATGGGGGCAATCAGTATCATATCTTCCGATTCACAGGCTATGGGTCGCATAGGAGAGGTTATTTCAAGAACGTGGCAAACTGCACACAAAATGAAGTTGGCAAGACCACCTCCATCAGACAATGATAACTTGCGGATCAAGCGATATGTATCCAAATATACCATAAATCCAGCCATAGCAAACGGGTTTTCTCAGTATGTTGGTTCAGTAGAGGTAGGGAAGTTGGCTGATCTCGTTCTCTGGAAGCCAGCCTTTTTTGGGGCAAAACCAGAAATGGTGATCAAAGGTGGTATAATTGCATGGGCAAACATGGGTGATCCAAATGCAAGCATACCTACTCCTGAACCGGTACTGATGAGGCCAATGTTTGGATCTTTTGGAAAGGCTGGAAGTGCCAACTCAATTGCCTTTGTCAGCAAGGAAGCTGTTAACGTCGGAGTTAAAGCCATGTACGGACTCGAAAAGAGAGTTGAAGCTGTAGGCAACGTTAGGAAACTCACCAAACTTGACATGAAGTGGAATGATGCCCTTCCATTCATCGAAGTAGATCCCGAAACATACACGGTGAAAGCCGATGGCGAAGTTCTTACCTGCCAGCCGGCAACTTCTATTCCACTTTCTCGAAATTACTTCCTTTTCTAA 2778 43.77 MGKVSHLVIGPNRSDNDNNKKANRFQSQNIKLFFIQHFHYFYRRLHLYHTTSQCVRASQSPYFIFLPISTSFASEKQPSNHLLPHCAVVTKRMKLSPKELDKLGLHNAGFLAQKRLARGLRLNYTEAVALIATQILEFARNGDKSVAELMELGPKLLGRRQVLPAVPHLVDSVQVEGTFPDGTKLVTVHNPFEEENGNLELALEGSFLPVPSPEKFPLMESSVVPGEIICPNDKISINVGRKAVRLSVVNKGDRPIQVGSHYHFIEVNPSLVFDRSKAYGMRLNISAGSATRFEPGDPKSVTLVAIGGNQVIRGGNGIADGPVDSSKLKDVMEAVHAREFAHVEENNAREGIAGIDDEFTTRLSREDYANRYGPTTGDKVRLGDTDLYAEIEHDFSVYGDECVFGGGKVIREGMGQSCGHPPALSLDTVITNAVIIDHCGIFKTDIGIKDGFIMTLGKAGNPDVMDGVFRDLIIGANTEVIAGEGLLVTAGAIDCHVHFICPQLAYEAISSGITTLVGGGTGPAAGTCATTCTPSPVQMRMMLQSTDDLPLNFGFTGKGNSSKPDELYDIVRAGAMGLKLHEDWGTTPAAIDNCLTVAEKYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIRVCGVKNVLPSSTNPTRPFTMNTVDEHLDMLMVCHHLDRNIKEDVAFAESRIRKETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKLARPPPSDNDNLRIKRYVSKYTINPAIANGFSQYVGSVEVGKLADLVLWKPAFFGAKPEMVIKGGIIAWANMGDPNASIPTPEPVLMRPMFGSFGKAGSANSIAFVSKEAVNVGVKAMYGLEKRVEAVGNVRKLTKLDMKWNDALPFIEVDPETYTVKADGEVLTCQPATSIPLSRNYFLF 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17850938 17861821 + PI0019769.1 Cmetu10g0294 367157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0294 925 CDD Urease_alpha 362 924 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmetu10g0294 925 FunFam Urease 241 359 - -
Cmetu10g0294 925 Gene3D Urease, beta subunit 241 360 IPR036461 -
Cmetu10g0294 925 SUPERFAMILY Urease, beta-subunit 224 351 IPR036461 -
Cmetu10g0294 925 NCBIfam urease subunit beta 224 324 IPR002019 GO:0035550|GO:0043419
Cmetu10g0294 925 Pfam Urease alpha-subunit, N-terminal domain 362 481 IPR011612 -
Cmetu10g0294 925 SUPERFAMILY Metallo-dependent hydrolases 491 925 IPR032466 -
Cmetu10g0294 925 SUPERFAMILY Composite domain of metallo-dependent hydrolases 761 837 IPR011059 GO:0016810
Cmetu10g0294 925 ProSiteProfiles Urease domain profile. 491 925 IPR017951 GO:0006807|GO:0009039|GO:0016151
Cmetu10g0294 925 PANTHER UREASE 93 925 - -
Cmetu10g0294 925 Gene3D - 96 216 IPR036463 GO:0016151|GO:0043419
Cmetu10g0294 925 FunFam Urease subunit alpha 96 216 - -
Cmetu10g0294 925 Gene3D - 491 906 - -
Cmetu10g0294 925 CDD Urease_gamma 96 192 IPR002026 GO:0016151|GO:0043419
Cmetu10g0294 925 SUPERFAMILY Composite domain of metallo-dependent hydrolases 362 539 IPR011059 GO:0016810
Cmetu10g0294 925 NCBIfam urease subunit gamma 93 193 IPR002026 GO:0016151|GO:0043419
Cmetu10g0294 925 SUPERFAMILY Urease, gamma-subunit 93 196 IPR036463 GO:0016151|GO:0043419
Cmetu10g0294 925 PRINTS Urea amidohydrolase (urease) protein signature 785 798 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmetu10g0294 925 PRINTS Urea amidohydrolase (urease) protein signature 696 712 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmetu10g0294 925 PRINTS Urea amidohydrolase (urease) protein signature 657 674 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmetu10g0294 925 PRINTS Urea amidohydrolase (urease) protein signature 759 774 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmetu10g0294 925 NCBIfam urease subunit alpha 363 925 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmetu10g0294 925 CDD Urease_beta 223 323 IPR002019 GO:0035550|GO:0043419
Cmetu10g0294 925 Pfam Amidohydrolase family 487 811 IPR006680 GO:0016787
Cmetu10g0294 925 Hamap Urease subunit alpha [ureC]. 361 925 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmetu10g0294 925 Hamap Urease subunit beta [ureB]. 223 323 IPR002019 GO:0035550|GO:0043419
Cmetu10g0294 925 MobiDBLite consensus disorder prediction 1 21 - -
Cmetu10g0294 925 Gene3D Urease, subunit C, domain 1 361 838 IPR011059 GO:0016810
Cmetu10g0294 925 ProSitePatterns Urease active site. 679 695 IPR017950 GO:0009039
Cmetu10g0294 925 Pfam Urease, gamma subunit 93 191 IPR002026 GO:0016151|GO:0043419
Cmetu10g0294 925 ProSitePatterns Urease nickel ligands signature. 489 502 IPR029754 GO:0016151
Cmetu10g0294 925 Pfam Urease beta subunit 225 321 IPR002019 GO:0035550|GO:0043419
Cmetu10g0294 925 Pfam Urease subunit beta-alpha linker domain 323 356 IPR040881 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0294 K01427 - - csv:101209590 1613.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49