Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0315 ATGACCCTCTGCTTCTGCGTTAGAGCTTCAAAAGCTATTGCTACCACCGTTGCTATTTACCCTTTCTGTTTCAAGGTACGCCGTCTCTTTCCCTTCTCTTCATTCCTCCATTCCTGCACTTTAAACAACGCTATTGGAACGCTCTCTGAAGCCCATTATAGAGATCTTATCTTTGATACCATTAAAGAAAAGCCTTGGGCTTTTTGCAATAATAACTGGGTCTCTGATCAATTTGGTGCTGTGATCATCGACCCTCATTTGTTAATTCGAGTCCTTTATTCCATTCGAATTAGACCTAGAGTTGCCTTGCGTTTCTTCCGATGGGTCATGGCTCAACCCGATTTTAAGGGGTCGGAATTTGTGTTTTGTGCTATTCTTGATATTCTTGTTCGGAATAATTTGATGAGTTCTGCGTATTGGGTGATGGAGAGGGTGGTTAGCATTGAAATGCATGGAGTTGTCGACGTTTTAATTGCTGGGCATGTTTGTTTAGAGGCTTCAATTAAGCTTCTTGATATTCTGTTGTTGATATACACGAAGAAATCAATGGTTGAAGAAAGCTTGTTGGTTCTCGATAAAATGATTCGGAATGGTTTACTGCCTGATGTTAAGAACTGTAATAGGATTCTCAGGGTTCTAAGAGATGAGAATCTTCTGTGTAAAGCTAAAATTGTGTATGGGATGATGGAACAGTTTGGGATAAAGCCAACAGTTGTCACTTATAATACTATGCTGGATTCCTATTGCAAGGAGGGGAGAGTGCATCAAGCTTTAGAGCTTCTATCAGAGATGCAAGAGAGAGGGTGTTACCCAAATGATGTAACGTATAATGTGTTGGTCAATGGGTTGTCGAAGAAAGGAGAGCTTGAACAAGCAAAGGGACTCATTGAGGAGATGTTGAACTCTGGGCTCAATGTTTCAGCATACACATATAATCCGTTGATCTATGGTTTTTGCAAGAAAGGATTGTTTGTTGAAGCATTTGATCTTGTGGAAGAAATGATGAATAAAAGAGCTTTCCCTACTTTATCAACTTATAATACTCTGATGTACGGCCTTTGCAAGTGGGGGCAAGTGACTGATGCTAGACTGCAGTTTTCCGATATGTTGAAAAGCAAGTTTAAGCCTGACATAGTTTCATTCAATATCCTACTGTATGGTTACTGTAGGACTGGGTGTATAAGTGAGGCTTTTCTATTGTTTGATGAATTGAAATGCAGAGATCTCATTCCGACTGTGGTAACATATAATACACTTATATATGGTCTTTGTATGTGGGATTACTTGGATGTTGCTTTGCGGTTGAAAAAGGAAATGACTGATCAAGGGTTATTCCCTGACATCTTTACATATACTATACTGGTTAATGGTTGTTTCAAGTTGGGGCATTTATCAATGGCCAGAGGCTTCTTTAATGAGATGTTGTGCAAAGGGTTGAAGCCTGATCGTTTTGCTTACATTACTCGAATAGTTGGAGAAATGAAGATCGGAGATACATCTGTAGCGTTTAGCATGCGAGAAGAAATGTTGGCAGAGGGTTTTCCTCCAGATGTCGTCACATACAATGTTTTTGTGCATGGACTTTGCCAACAGGGAAATTTTGAAGAGGCATGTGATCTATTAGAGAACATGGTGCATGATGGTCTTGTTCCGGATCATGTCACGTATACTAGTATAATTAATGGTTTCGTGAAAAATGGGCACTTGAGGAAGGCTAGAGAGGTTTTCAATGAAATGCTCAGCAAGGGTGTAGCCCCTTCTGTAGTAACGTATACAGTTCTCATTCATGCACATGCAACTAAGAAAATGTTGGATCTAGCGTTTATGTACTTCTCGAAAATGCTGGAGAAGAGTGTTCCAGCAAACGTGATTACGTACAATGCAATAATTAATGGTCTTTGCATGGCAAGGAGAATAGACGAGGCTTATAAATATTTTGATGAGATGGAAGAACAAGGAATTCTTCCAAATAAGTTCAGTTATACCATATTAATAAATGAGAGCTGCAATATGGGTTGTTGGGAGGAAGCTCTAAGATTGTACAGAGAAATGCTAGATAGAAAAATTCAGCCTGATTCTTTTACACATAGCGTGCTTCTGAAGAATCTACATTGGGATTATAAAGTTCATGCAGTACAGTGTGTAGAGAGTTTGATTCAAAATGTCGAAGATAATGTTAATGCCAGGTGA 2190 39.27 MTLCFCVRASKAIATTVAIYPFCFKVRRLFPFSSFLHSCTLNNAIGTLSEAHYRDLIFDTIKEKPWAFCNNNWVSDQFGAVIIDPHLLIRVLYSIRIRPRVALRFFRWVMAQPDFKGSEFVFCAILDILVRNNLMSSAYWVMERVVSIEMHGVVDVLIAGHVCLEASIKLLDILLLIYTKKSMVEESLLVLDKMIRNGLLPDVKNCNRILRVLRDENLLCKAKIVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVHQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLIYGFCKKGLFVEAFDLVEEMMNKRAFPTLSTYNTLMYGLCKWGQVTDARLQFSDMLKSKFKPDIVSFNILLYGYCRTGCISEAFLLFDELKCRDLIPTVVTYNTLIYGLCMWDYLDVALRLKKEMTDQGLFPDIFTYTILVNGCFKLGHLSMARGFFNEMLCKGLKPDRFAYITRIVGEMKIGDTSVAFSMREEMLAEGFPPDVVTYNVFVHGLCQQGNFEEACDLLENMVHDGLVPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHATKKMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMARRIDEAYKYFDEMEEQGILPNKFSYTILINESCNMGCWEEALRLYREMLDRKIQPDSFTHSVLLKNLHWDYKVHAVQCVESLIQNVEDNVNAR 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20681213 20686953 - PI0018097.2 Cmetu10g0315 367178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 274 306 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 519 552 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 554 587 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 239 272 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 589 622 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 624 657 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 345 378 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 379 412 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 659 693 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 414 448 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 449 482 IPR002885 -
Cmetu10g0315 729 NCBIfam pentatricopeptide repeat 309 341 IPR002885 -
Cmetu10g0315 729 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 102 406 - -
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Cmetu10g0315 729 Pfam PPR repeat family 376 424 IPR002885 -
Cmetu10g0315 729 Pfam PPR repeat family 551 599 IPR002885 -
Cmetu10g0315 729 Pfam PPR repeat family 236 285 IPR002885 -
Cmetu10g0315 729 Pfam PPR repeat family 308 355 IPR002885 -
Cmetu10g0315 729 Pfam PPR repeat family 622 670 IPR002885 -
Cmetu10g0315 729 Gene3D Tetratricopeptide repeat domain 93 219 IPR011990 GO:0005515
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Cmetu10g0315 729 Pfam PPR repeat 443 474 IPR002885 -
Cmetu10g0315 729 Pfam PPR repeat 513 545 IPR002885 -
Cmetu10g0315 729 SUPERFAMILY TPR-like 326 692 IPR011990 GO:0005515
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Cmetu10g0315 729 Pfam PPR repeat 174 199 IPR002885 -
Cmetu10g0315 729 FunFam Pentatricopeptide repeat-containing protein At1g09900 230 300 - -
Cmetu10g0315 729 Gene3D Tetratricopeptide repeat domain 369 504 IPR011990 GO:0005515
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Cmetu10g0315 729 Gene3D Tetratricopeptide repeat domain 505 581 IPR011990 GO:0005515
Cmetu10g0315 729 Gene3D Tetratricopeptide repeat domain 220 301 IPR011990 GO:0005515
Cmetu10g0315 729 Gene3D Tetratricopeptide repeat domain 302 368 IPR011990 GO:0005515
Cmetu10g0315 729 Gene3D Tetratricopeptide repeat domain 652 722 IPR011990 GO:0005515
Cmetu10g0315 729 Gene3D Tetratricopeptide repeat domain 582 651 IPR011990 GO:0005515
Cmetu10g0315 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0315 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012317 1 3 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 2 0 27