Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0340 ATGAAAACAAGGGAAGAACATGGAAGCCACAATCCCTACACCAAATTGTTGCTCACCGGCCTCTCCGCCATGGTGGCGGAATCCGCCACCTTCCCCATAGACCTCATTAAGACCAGGCTCCAGCTCCACGGCGAGTTTTCCTCTTCCTCTCGCTCCACAAATGCCTTCAAACTCGCTTCAGCCATCGTCAAGGACCAGGGTCCTTTTGCTCTCTACAAAGGCTTGTCTCCGGCGATTCTCAGGCACCTCTTATATACGCCCGTACGAATCGTTGGATACGAACACCTCCGATCCCTCTTCCTTGCTTCCGATGGTAGCTCTGTTTCCTTCCATTCCAAGGCCCTTGTCGGTGGAATCTCCGGCTCCATTGCTCAGGTAGTGGCAAGTCCTGCTGATCTTGTTAAGGTGAGGATGCAAGCTGATGGGCGTCTAATAAGCCAAGGTCTGCAACCTAGATACTCAGGGCCTTTCGATGCCTTAACCAAGATAGTGCGTGGAGAAGGGGTTGTTGGACTTTGGAAAGGGGTTGTTCCAAATGTTCAAAGAGCATTTTTGGTTAACATGGGAGAATTAGCCTGCTATGATCATGCTAAACGTTTTGTTATTCAGAATCAAATAGCTGGAGATAATATTTGTGGCCACACCTGTGCTTCTGTAATTTCAGGTCTGTGTGCAACTGCTTTGAGTTGTCCAGCTGATGTTGTAAAGACAAGAATGATGAATCAAGCTGCTAGCAAGGAAGGAATTACCAAGTACAACAGCTCTTATGATTGTCTCGTGAAGACTGTTAAAGTTGAAGGATTGAGAGCTTTGTGGAAGGGGTTTTTTCCTACTTGGGCCAGGCTTGGTCCTTGGCAATTTGTCTTCTGGGTGTCTTATGAGAAATTTCGTAAACTTGCTGGGTTATCTTCCTTCTAG 918 47.39 MKTREEHGSHNPYTKLLLTGLSAMVAESATFPIDLIKTRLQLHGEFSSSSRSTNAFKLASAIVKDQGPFALYKGLSPAILRHLLYTPVRIVGYEHLRSLFLASDGSSVSFHSKALVGGISGSIAQVVASPADLVKVRMQADGRLISQGLQPRYSGPFDALTKIVRGEGVVGLWKGVVPNVQRAFLVNMGELACYDHAKRFVIQNQIAGDNICGHTCASVISGLCATALSCPADVVKTRMMNQAASKEGITKYNSSYDCLVKTVKVEGLRALWKGFFPTWARLGPWQFVFWVSYEKFRKLAGLSSF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19487994 19489526 + PI0019163.1 Cmetu10g0340 367203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0340 305 SUPERFAMILY Mitochondrial carrier 10 295 IPR023395 -
Cmetu10g0340 305 FunFam mitochondrial uncoupling protein 3 14 302 - -
Cmetu10g0340 305 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085
Cmetu10g0340 305 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Cmetu10g0340 305 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Cmetu10g0340 305 PRINTS Mitochondrial carrier protein signature 123 141 IPR002067 GO:0055085
Cmetu10g0340 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 299 IPR018108 -
Cmetu10g0340 305 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 13 299 - -
Cmetu10g0340 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 99 IPR018108 -
Cmetu10g0340 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 108 200 IPR018108 -
Cmetu10g0340 305 Gene3D Mitochondrial carrier domain 13 301 IPR023395 -
Cmetu10g0340 305 Pfam Mitochondrial carrier protein 108 204 IPR018108 -
Cmetu10g0340 305 Pfam Mitochondrial carrier protein 213 300 IPR018108 -
Cmetu10g0340 305 Pfam Mitochondrial carrier protein 11 101 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0340 K15112 - - csv:101217011 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0340 Cmetu-Chr10:19487994 Cmetu11g1795 Cmetu-Chr11:6892862 1.50E-46 dispersed
Cmetu10g0340 Cmetu-Chr10:19487994 Cmetu08g0647 Cmetu-Chr8:15111967 8.50E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g939 . . . . . . Bma14g01655 . Cmo04g01752 . . . . . Sed07g1949 . Cpe01g01479 Bhi07g01537 Tan04g1057 Cmetu10g0340 Lac13g0337 Hepe10g1763 . . Cla05g02425 Cam05g2607 Cec05g2641 Cco05g2679 Clacu05g2609 Cmu05g2462 Cre05g2578 . . Cone6ag0567 . Lsi04g00400 Csa05g02475 Chy10g01023 Cme10g00395 . Blo11g00784 Bda07g01476 . . . . . . . . Cma04g01673 . Car04g01711 . . Cpe07g00162 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011715 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 2 1 1 30