Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0397 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCTAGGGATGCTGGATGTTTAACTGATGGAGAGATGAACTATGATAGCTCCTCCAGAATTGAAACCAAACGTGGCCATCAATGGTTCATGGATGGCAGTGCACCAGAGCTATTCAGTAGCAAGAAGCAAGCAATTGAAGCTGTAAATTCTAGACCTGTTCCTGGAGTTCCACACATGAATGTTTCTCCCTGGGAAAACACTTCAAGTTTTCAGTCAGTCCCTGGACACTTCACTGATCGTCTTTTTGGCTCAGAGCCAATACGAACTGTCAACTTGGTTGATAGAGGCATCTCTGTGGGAAATGCAAATATGGACATGGGAAGAAAGGAGTTTGAGAATCATTTTACAAACAACCCATCCGTTGGCTTGTCCATGTCTCAATCCATTGAGGATCCGTCATCATGCCTCAATTTTGGTGGAATTAGAAAAGTTAAAGTCAATCAAGTGAGGGATCCTGACGTTGGCATGCCTGCTTCTTTGGGGCATGCCTATAGTAGGGGTGATAATTGTACAATTTCGATGGGTACAGGATTTAACAAAAACCATGAGAATGCCATATCATTGGGCCAAACTTATAATAGTAGAGATGAGAATGCCATTTCGGTTGGCCCTGCATATCACAAGACAGATGACAATTTTATTTCAATGGGTCATGCTTTCAGCAAGGGTGATGGGAGTTTTATTACGATTGGGGATGACTCTTTTATTTCAATGGGTCAATCTTATGAGAAGGCTGAAGGAAATATCATCTCTTTTGCCTCCTACAATAAAGGGCAAGAAAATTTTATATCAATGGGGCCAGCCTATAGTAAGGCGGGTGATACTTTCATTTCAATGGCTTCATCCTTTAATAAGGGGAATGATGACAACTTATCCATGGGTCCAACCTATGACAAGGTGAACTCTGACATTGTACATGTCGGTCCTAAATTTGACAAAGCAGATTCTGGTGCTGTGTCAATGGCTCACAACTATCATAAGGGTGAGAGTAATACCATATCTTTTGGTGGTTTTGATGACGAGAATGGGACAGATAATCCTTCTGGTGGGATCATTAGCAGTTATGACTTGTTAATGGCTAATCAGGCTTCTGCCCAGGCATCAGAAGTATCAACCCTGAGAGACTCAGTTGATCCCAATGTGGAAGTAAACATTAACAATGCCATAAAGGTTGATGGAAAAATCGACACAAATTCCAAAAATAAAGAGCCGAGGATGAGTAAGAAGGTTCCACCAAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCCACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTCAAGGGAATTATTAAAGGAACTGGATACTTGTGCAGTTGTGAGAACTGCAATCATTCAAAGGCTCTCAATGCTTATGAATTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAACCATATTTACTTTGAGAATGGGAAAACTATCTATGCTGTTGTTCAAGAGCTAAAGAACACCCCTCAGGAGATGCTATTTGATGCAATCCAGAATGTGACTGGCTCTCCCATTAATCAGAAGAATTTCCGTATTTGGAAAGCATCGTATCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAAGATGAAGTAATCATGCCTTCTTGA 1692 41.25 MSFQHKSFWIPRDAGCLTDGEMNYDSSSRIETKRGHQWFMDGSAPELFSSKKQAIEAVNSRPVPGVPHMNVSPWENTSSFQSVPGHFTDRLFGSEPIRTVNLVDRGISVGNANMDMGRKEFENHFTNNPSVGLSMSQSIEDPSSCLNFGGIRKVKVNQVRDPDVGMPASLGHAYSRGDNCTISMGTGFNKNHENAISLGQTYNSRDENAISVGPAYHKTDDNFISMGHAFSKGDGSFITIGDDSFISMGQSYEKAEGNIISFASYNKGQENFISMGPAYSKAGDTFISMASSFNKGNDDNLSMGPTYDKVNSDIVHVGPKFDKADSGAVSMAHNYHKGESNTISFGGFDDENGTDNPSGGIISSYDLLMANQASAQASEVSTLRDSVDPNVEVNINNAIKVDGKIDTNSKNKEPRMSKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCENCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIQNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVIMPS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16078799 16085495 - PI0012660.1 Cmetu10g0397 367260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0397 563 Pfam Tify domain binding domain 456 511 IPR032308 -
Cmetu10g0397 563 PANTHER AUTOIMMUNE REGULATOR 8 503 - -
Cmetu10g0397 563 MobiDBLite consensus disorder prediction 405 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0397 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g1975 Cmetu-Chr8:22122306 Cmetu10g0397 Cmetu-Chr10:16078799 6.40E-42 dispersed
Cmetu10g0397 Cmetu-Chr10:16078799 Cmetu11g0841 Cmetu-Chr11:6457455 2.90E-83 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0401 . 48 537 PHD Transcription Factor Family AT3G14980 57.1 1.2e-163 574.7
Cmetu08g1975 . 18 856 PHD Transcription Factor Family AT3G53680 52.8 5.8e-245 844.3
Cmetu10g0397 . 415 544 PHD Transcription Factor Family AT3G53680 54.6 1.2e-37 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44