Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0469 ATGATCCTTTACACATCTGCTCCAACTTCAGTCATCTTCCCCAAATTCAATGCTTCTCAACATGTCAAATCTAGATCATCATCATTCTACAAATGCGCTCATCAGAGCAATCTGGAATCGCCCAAGAGAAGCGATCTAAAGATAGTGCCACCATTCCCACGTTTGCTTTGCCAAAACCATTCTTGCTTATGCGGAAGAAGGCAGTTCATTGAAGCAGCTGCAGCCACATGTCTGCTCCCTCTTTGCCCTTCAATGGCTTCTTCTAATCCATACTCTGATTACACTGCTATGTTGAATAGGGTTCATCCTCCTAAGCCAGAATGGTACGAGGATTTCTATGCTTCACTTCTGGCTAATGCCATGAAATCGTATGAAGAGCAGATTGCAGATTACAAGTCCCAGATGTTTGCCAATTTGAGAGGGAAGGCTCAGAAAGTGTTGGAGATTGGAATTGGTGCTGGTCCTAACCTTAAGTATTATGCTGGGGATGAAGGTGTGCAGGTTTATGGTGTGGATCCAAATCAAAAAATGGAGAATATGCTCGAGAAGCAGCACAGAATGCTGGTTTGCCACCTGAGAATTTTGTGCTATACCATTACCGATGCTTCTGTTGATGCTGTTGTTGGAAAACTTGTCTTGTGTTCTGTGACCAATGTTGACATGACTCTAAAGGGTGAAGAGAGTTTTAAGACCTGGTGGGGACTATACATATTTGTCGAACATGTTGCTGCAAAAGAAGGAACCATGCTTCGATTTACGCAGAACCAGGGTTTCAATGTTGATCTAAACATGGCTTCGTTCTCTAGTTTTGCCTTCATAAATCCTCAAGTTTATGGAATTGCTTATAGATGA 852 42.49 MILYTSAPTSVIFPKFNASQHVKSRSSSFYKCAHQSNLESPKRSDLKIVPPFPRLLCQNHSCLCGRRQFIEAAAATCLLPLCPSMASSNPYSDYTAMLNRVHPPKPEWYEDFYASLLANAMKSYEEQIADYKSQMFANLRGKAQKVLEIGIGAGPNLKYYAGDEGVQVYGVDPNQKMENMLEKQHRMLVCHLRILCYTITDASVDAVVGKLVLCSVTNVDMTLKGEESFKTWWGLYIFVEHVAAKEGTMLRFTQNQGFNVDLNMASFSSFAFINPQVYGIAYR 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19463603 19466658 - PI0007010.1 Cmetu10g0469 367332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0469 283 Coils Coil 114 134 - -
Cmetu10g0469 283 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 103 222 IPR029063 -
Cmetu10g0469 283 Gene3D Vaccinia Virus protein VP39 104 226 IPR029063 -
Cmetu10g0469 283 Pfam Methyltransferase domain 125 224 - -
Cmetu10g0469 283 CDD AdoMet_MTases 145 216 - -
Cmetu10g0469 283 PANTHER METHYLTRANSFERASE LIKE 7B 40 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0469 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0469 Cmetu-Chr10:19463603 Cmetu10g0023 Cmetu-Chr10:19467198 1.30E-95 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g928 Blo01g00430 . Bda01g02150 . . . . . . Cmo18g01156 . Cma18g01136 . Car18g01048 Sed07g1943 . . Bhi07g01543 Tan04g1063 Cmetu10g0469 Lac13g0332 Hepe10g1758 . . . . . . . . . . . Cone6ag0575 . Lsi04g00404 Csa05g02470 Chy10g01018 Cme10g00401 . . . . . Bpe02g02337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009174 2 1 1 0 1 1 1 1 1 2 1 1 1 2 2 1 1 1 0 1 2 1 1 1 1 2 0 2 1 1 34