Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0484 ATGGATGCCACGACGAGCGAAACGGCGGCACTACAGTTCCATAGCATTCCTGATCAATCTGTTTCTACTATTGTCACCAGTGCAACATCGACATTTCCACAACCGAAACGACATTGCTTTGGGGAATCCGACCCAGGCGAATTCCCCTTAGCCGCCAATCCCTCCATTGTTCTTCATGTCTTGACGGCATGTAACTTGGATCCTCAAGACCTTGCAAAGTTAGAGGCAACATGTTCATTCTTTAGACAGCCTGCAAACTTCGCTCCTGACTATAAATTGTCGATTTCGGAGCTTGCTGCATTAGATATGTGCCGAAAGAGAGCCATATTCAAACCTATGACACCAGAACAGCATCAAGCATTGAAGCAAAGATGTGGTGGTTCCTGGAAACTGGTATTGAGGTTTTTAGTGGCTGGAGAATCATGTTGCCGAAGGGAAAAATCCATGGCAATTGCAGGACCTGGCCACAGCATCGCGGTCACTTCAAAAGGAGCTGTTTACTCTTTTGGATCCAACAGCTCTGGACAGCTTGGACATGGTACAACTGAAGAGCAATTACCCCCTCGCCTTATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGGGCGGGAGGACAATGTTAATCAGCGAAGCTGGCCATGTTTATGCATTTGGCAAGGATTCATTTGGTGAAGCTGAGTATGGAGCTCAAGGAGCTCAAGTTGTTACTACACCAAAGTTGGTTGAGTCGCTGAAGGATATATTCGTGGTGCAAGTTGCAATTGGAAATTTCTTTACTGCTGTATTATCAAGAGAAGGTACTGTGTACACATTTTCTTGGGGGACTGACAGTAGGCTCGGTCATCATACCGAACCGAACGACTTGGAACCACGGCCCCTGAAAGGAGCGTTAGAAAACATTCCAGTTGTTCAAATTGCTGCTGGATATTGCTACCTTCTTGCTCTAGCTTGTCATCCTAGTGGCATGTCAGTATACTCAGTTGGATGTGGACTGGGCGGTAAGCTCGGTCATGGTTCAAGGACCGATGAGAAACACCCACGACTTATTGAACAATTTCAGCTTCTGAATCTCCAGCCAGTCGTGGTCGCTGCTGGTGCTTGGCACGCAGCTGTTGTAGGTCGTGACGGTCGAGTTTGTACGTGGGGTTGGGGTCGATATGGGTGTCTGGGTCATGGGAATGAGGAATGTGAATCTTCCCCTAAGGTGGTGGAAGCATTAATCAATGTTAAAGCAGTTCATGTTGCTACAGGAGATTATACAACATTCGTAGTATCTGATGATGGCGACGTGTATTCTTTCGGTTGTGGAGAATCAGCTAGCCTCGGGCATAACGTCGTCGTCCCCGAGGAACAGGGTAATCGGCAACCGCACGTTTTAAGCCCAGAACTAGTCAGGTCCCTGAAGCAAATTAATGAGCGGGTAGTTCAGATTAGCCTCACTAATTCAATTTACTGGAATGCACACACCTTTGCACTGACGGAGTCGGGGAAGTTGTATGCATTTGGTGCTGGAGACAAAGGGCAACTCGGGATTGAACTTCTAGCGAATCAAACCGAAAGAGGAAATCCAGAGCAAGTTGACATTGATCTAAATTAA 1608 47.14 MDATTSETAALQFHSIPDQSVSTIVTSATSTFPQPKRHCFGESDPGEFPLAANPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYKLSISELAALDMCRKRAIFKPMTPEQHQALKQRCGGSWKLVLRFLVAGESCCRREKSMAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTEEQLPPRLIRSLQGIRIIQAAAGGGRTMLISEAGHVYAFGKDSFGEAEYGAQGAQVVTTPKLVESLKDIFVVQVAIGNFFTAVLSREGTVYTFSWGTDSRLGHHTEPNDLEPRPLKGALENIPVVQIAAGYCYLLALACHPSGMSVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALINVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNVVVPEEQGNRQPHVLSPELVRSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELLANQTERGNPEQVDIDLN 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18027567 18031579 + PI0019112.1 Cmetu10g0484 367347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0484 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 535 IPR000408 -
Cmetu10g0484 535 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 366 376 IPR000408 -
Cmetu10g0484 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 431 IPR000408 -
Cmetu10g0484 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 432 499 IPR000408 -
Cmetu10g0484 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 164 215 IPR000408 -
Cmetu10g0484 535 PRINTS Chromosome condensation regulator RCC1 signature 369 387 IPR000408 -
Cmetu10g0484 535 PRINTS Chromosome condensation regulator RCC1 signature 427 448 IPR000408 -
Cmetu10g0484 535 PRINTS Chromosome condensation regulator RCC1 signature 166 182 IPR000408 -
Cmetu10g0484 535 PRINTS Chromosome condensation regulator RCC1 signature 256 272 IPR000408 -
Cmetu10g0484 535 PRINTS Chromosome condensation regulator RCC1 signature 272 286 IPR000408 -
Cmetu10g0484 535 PRINTS Chromosome condensation regulator RCC1 signature 216 232 IPR000408 -
Cmetu10g0484 535 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 227 516 - -
Cmetu10g0484 535 SUPERFAMILY RCC1/BLIP-II 148 448 IPR009091 -
Cmetu10g0484 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 322 IPR000408 -
Cmetu10g0484 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 379 IPR000408 -
Cmetu10g0484 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 216 269 IPR000408 -
Cmetu10g0484 535 Pfam Regulator of chromosome condensation (RCC1) repeat 163 212 IPR000408 -
Cmetu10g0484 535 Pfam Regulator of chromosome condensation (RCC1) repeat 379 428 IPR000408 -
Cmetu10g0484 535 Pfam Regulator of chromosome condensation (RCC1) repeat 431 482 IPR000408 -
Cmetu10g0484 535 Pfam Regulator of chromosome condensation (RCC1) repeat 269 318 IPR000408 -
Cmetu10g0484 535 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Cmetu10g0484 535 Pfam Regulator of chromosome condensation (RCC1) repeat 216 266 IPR000408 -
Cmetu10g0484 535 Gene3D - 147 322 IPR009091 -
Cmetu10g0484 535 Gene3D - 323 534 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0484 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0621 Cmetu-Chr7:22110117 Cmetu10g0484 Cmetu-Chr10:18027567 2.20E-50 dispersed
Cmetu10g0484 Cmetu-Chr10:18027567 Cmetu11g1991 Cmetu-Chr11:24890974 1.40E-15 dispersed
Cmetu10g0484 Cmetu-Chr10:18027567 Cmetu01g2187 Cmetu-Chr1:17441689 7.60E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44