Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0494 ATGAGTTTCAAACAACACATAAAACAAAGACTAAAAGAAAAAAAAATCCATCACTCAAATTTTGGAAGTTTGTTCATAGATATTTGTTCTAAAAAATTCAAATGTAGGGTTCTAATTCATTCCCCCTCTTCTTATCTTCCCCATCTCTTAATTCAATTGATTCCAAACAAAACCAAAACAATTTCTTTCTTCTTTCTTTCAATTTCTGAACTCTCAACAATGGCATCCACCACATTGAGCACTTCAATAACAACAAGAGGAGATTCATTTCCAAATTTCATTTCAATTCCAAACAAACCCTTAAATCCCAAAGTAATTAGTTTTGCCTTTCTAAAACGCGCCGCCCCTCGAGGGGTAGCGGCAACGTGGAGGACGGCAGAGCACGGTGGAGCATTGGCGGCGGAGGAGGTGGATGAGGAGATGGGGAGGATTCGGCGGCTGCAGAATGGGTCGGACGTGAGAGGGGTGGCGATCGAGGGGGAAAAGGGTAGGACGGTGGATTTGACGGCGGCAGCCGTGGAGGCGTTAGCGGAGAGTTTCGCCGAGTGGGTAATCGAGGGGATGGAAACGGGGAGGAGCGTGAGTGTTTCGATCGGGAGAGACCCGAGAATTTCCGGAGGTGCTTTGAGTGTTGCGGTGTTCTCCGGAGTTAGTAGGGCGGGATGTTTGGTGTTTGATATGGGACTTGCCACCACGCCGGCGTGTTTCATGAGCACCGTTTTGCCTCCTTTTTCTTATGATGCTTCTATTATGTTAACGGCATCTCACTTACCATATACACGAAATGGGATGAAGTTTTTCACGAAGAGAGGAGGGTTAAGCTCGCCGGAGGTGGAGGAGATATGCGAGAGAGCCGCCGTGAAGTACGCAAACAGAGTGGTCAAAGTCTCTACTCTTCTCCGAACGCCGCCGTCAAAGGTGGATTTCATGGCGGCTTACTCAAAGCATCTCAGAGATATCATTAAGCAAAGAATCAATCATCCTTTGCATTATGATACTCCTCTCAAAGGATTTCAGATAATAGTAAATGCGGGTAACGGATCCGGAGGCTTCTTCACATGGGATGTCTTAGACAAGCTGGGCGCAGACACCTTTGGCTCTCTCCATCTCAACCCAGACGGCATGTTCCCCAACCACATCCCTAACCCAGAAGACAAAACCGCCATGTCACTCACTCGAGCCGCCGTCCTCCACCAACAAGCCGACCTTGGTGTCGTCTTTGACACTGACGTTGACCGTAGTGGTGTCGTCGATCACGAGGGCAACCCAATCAACGGCGACAAACTAATCGCCCTAATGTCGGCCATTGTCCTTCGAGAGCACCCTGCCACGACCGTTGTCACCGACGCCCGTACCAGTGTTGCTCTCACAAAGTTCATTACCAACCGAGGTGGACGACATTGTCTATACCGCGTCGGGTATCGGAATGTCATCGACAAAGGAATCCAACTCAACGTTGATGGAATCGAGACACATCTCATGATGGAGACGTCGGGGCATGGGGCACTTAAAGAGAATTATTTTTTGGATGATGGGGCTTATATGGTAGTGAAGATTATTATTGAAATGGTGAGAATGAAACTAGAGGGATCAAATGAAGGGATTGGGAGTCTTATAAAGGATCTTGAAGAACCTTTGGAGTCTGTGGAATTGAGGTTGAATGTGATATCTGACCCAAGTTTTGCTAAAGAGAAGGCTGTGGAGGTTATTGAGACATTTAGGGACTTTGTCCAGGAAGGGAAGCTTGAGGGATGGGAACTGGACTCATGTGGAGATTGTTGGGTGCATGAAGGGTGCCTAGTGGACTTAAATGACCATCCCAAGCCAATTGATGCACAAATGTACAGGGTTAAAGTATTTGATAAGGAAAATGGAGAAGTCGGTTGGGTACACTTAAGGCAAAGCATTCACAATCCAAACCTTGCTTTAAATATGCAATCATCTTTGCTAGGAGGCTGCCTCCAAATCACTAGAGACTTCAGAGATAAGTATGAAAACTACTCTCTCAAATTTAATTTAGAGCAAGTATATATTTTTGTTTCTAATAACATTTTGCTTTTAAAGAAGTAG 2070 45.99 MSFKQHIKQRLKEKKIHHSNFGSLFIDICSKKFKCRVLIHSPSSYLPHLLIQLIPNKTKTISFFFLSISELSTMASTTLSTSITTRGDSFPNFISIPNKPLNPKVISFAFLKRAAPRGVAATWRTAEHGGALAAEEVDEEMGRIRRLQNGSDVRGVAIEGEKGRTVDLTAAAVEALAESFAEWVIEGMETGRSVSVSIGRDPRISGGALSVAVFSGVSRAGCLVFDMGLATTPACFMSTVLPPFSYDASIMLTASHLPYTRNGMKFFTKRGGLSSPEVEEICERAAVKYANRVVKVSTLLRTPPSKVDFMAAYSKHLRDIIKQRINHPLHYDTPLKGFQIIVNAGNGSGGFFTWDVLDKLGADTFGSLHLNPDGMFPNHIPNPEDKTAMSLTRAAVLHQQADLGVVFDTDVDRSGVVDHEGNPINGDKLIALMSAIVLREHPATTVVTDARTSVALTKFITNRGGRHCLYRVGYRNVIDKGIQLNVDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIEMVRMKLEGSNEGIGSLIKDLEEPLESVELRLNVISDPSFAKEKAVEVIETFRDFVQEGKLEGWELDSCGDCWVHEGCLVDLNDHPKPIDAQMYRVKVFDKENGEVGWVHLRQSIHNPNLALNMQSSLLGGCLQITRDFRDKYENYSLKFNLEQVYIFVSNNILLLKK 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6123332 6139277 + PI0022910.7 Cmetu10g0494 367357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0494 689 FunFam phosphomannomutase/phosphoglucomutase isoform X1 339 416 - -
Cmetu10g0494 689 Gene3D - 148 296 - -
Cmetu10g0494 689 SUPERFAMILY Phosphoglucomutase, first 3 domains 312 423 IPR016055 GO:0005975|GO:0016868
Cmetu10g0494 689 FunFam Phosphomannomutase/phosphoglucomutase isoform B 418 539 - -
Cmetu10g0494 689 SUPERFAMILY Phosphoglucomutase, first 3 domains 151 321 IPR016055 GO:0005975|GO:0016868
Cmetu10g0494 689 Gene3D - 339 417 - -
Cmetu10g0494 689 CDD PMM_PGM 147 662 - -
Cmetu10g0494 689 PRINTS Phosphoglucomutase/phosphomannomutase family signature 372 385 IPR005841 GO:0005975|GO:0016868
Cmetu10g0494 689 PRINTS Phosphoglucomutase/phosphomannomutase family signature 337 356 IPR005841 GO:0005975|GO:0016868
Cmetu10g0494 689 PRINTS Phosphoglucomutase/phosphomannomutase family signature 248 262 IPR005841 GO:0005975|GO:0016868
Cmetu10g0494 689 PRINTS Phosphoglucomutase/phosphomannomutase family signature 401 416 IPR005841 GO:0005975|GO:0016868
Cmetu10g0494 689 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 313 421 IPR005845 GO:0005975
Cmetu10g0494 689 SUPERFAMILY Phosphoglucomutase, first 3 domains 425 526 IPR016055 GO:0005975|GO:0016868
Cmetu10g0494 689 Gene3D - 418 541 - -
Cmetu10g0494 689 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 425 525 IPR005846 GO:0005975|GO:0016868
Cmetu10g0494 689 PANTHER PHOSPHOHEXOSE MUTASE 139 655 - -
Cmetu10g0494 689 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 146 286 IPR005844 GO:0005975|GO:0016868
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0494 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0713 Cmetu-Chr3:6933036 Cmetu10g0494 Cmetu-Chr10:6123332 2.00E-106 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33