Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0522 ATGCTCACCTCTTACAAAGAATGTCTCAAGAATCACGCCGCCGCTGTCGGCGGCCATGCCCTCGACGGTTGCGGCGAGTTTATGCCTTCCATTACCTCCACACCCACCGATCCCACTTCTTTAAATTGTGCCGCTTGTGGTTGTCATCGGAATTTCCACCGCCGTGAATCGGACGATCCTTGGCCTAACCGTCGTTACTACCCATATCGTCTCTGTGCACCGCCGTCGCCGAGGTCGAGCCCAATCAAATCGCAAAGTCCCTCCTCACCGATTCCTGTACCGATTTCGCATATCCCACCGCCAGTTCAATTCTCCGGGCCCCATATGTTGGTGGCATTGAGCACAGGAGCGGCGGAGGAGGAGGAATTGAGGCGGAAACAGAGGAAGAGAAAGAGGACAAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTGTTTTCAGAGAAAATGGGATGGAGAATTGGGAAAAGTGAAGAAAGATCAGTGGAGGAATTTTGTAAAGAAATTGGAATAGGAAAGCGGGTGCTGAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAAAACAGAGAAAAACAGAGCTTCTCAAATTAGTGAAGAAAATGGTGGAAGTGACTCAAAACAGAGCACATAG 636 49.06 MLTSYKECLKNHAAAVGGHALDGCGEFMPSITSTPTDPTSLNCAACGCHRNFHRRESDDPWPNRRYYPYRLCAPPSPRSSPIKSQSPSSPIPVPISHIPPPVQFSGPHMLVALSTGAAEEEELRRKQRKRKRTKFSGEQKEKMQLFSEKMGWRIGKSEERSVEEFCKEIGIGKRVLRVWMHNNKYMGGKTEKNRASQISEENGGSDSKQST 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19375279 19376453 - PI0007042.1 Cmetu10g0522 367385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0522 211 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 185 - -
Cmetu10g0522 211 MobiDBLite consensus disorder prediction 189 211 - -
Cmetu10g0522 211 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Cmetu10g0522 211 Gene3D - 114 188 - -
Cmetu10g0522 211 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Cmetu10g0522 211 NCBIfam homeobox domain, ZF-HD class 128 185 IPR006455 -
Cmetu10g0522 211 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Cmetu10g0522 211 MobiDBLite consensus disorder prediction 185 211 - -
Cmetu10g0522 211 Pfam ZF-HD protein dimerisation region 4 57 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0522 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu09g0673 Cmetu-Chr9:19790625 Cmetu10g0522 Cmetu-Chr10:19375279 2.70E-43 dispersed
Cmetu10g0522 Cmetu-Chr10:19375279 Cmetu10g1264 Cmetu-Chr10:4711007 4.50E-29 dispersed
Cmetu10g0522 Cmetu-Chr10:19375279 Cmetu12g0529 Cmetu-Chr12:470913 2.60E-13 wgd
Cmetu10g0522 Cmetu-Chr10:19375279 Cmetu02g1465 Cmetu-Chr2:23678679 6.90E-14 wgd
Cmetu10g0522 Cmetu-Chr10:19375279 Cmetu04g0691 Cmetu-Chr4:8701566 3.20E-35 wgd
Cmetu10g0522 Cmetu-Chr10:19375279 Cmetu09g1945 Cmetu-Chr9:19775919 2.40E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013584 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8604 PF04770 ZF-HD_dimer 1.90E-28 No_clan Cmetu TF