Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmetu10g0535 | ATGGCTTATACATCGCAGTCTTCCCCTGGATTCTCTGCCACGCAACCCGACACCCCAGCGCCAAGCTCTGAGACAAATTCGATTCCTCCGCCCTTAATCTCCACAGGACCATCCAGATTTCCGCCAAAATTCCAACAGGAACAGATGTCATCTCCTTCTATTAGAACGCCAGCTGCAGCTTCTCCGGCGAATGGAATTAAAACTGGCAGTCCCATTCCTCATTTGAGTACTCCTCCCGGACCCCCTGTTTTTACTTCTCCCATTAGGCCTGCTGCTGTCCCTTTTCGTACTTCACCGGCATCTCCTCAGCCAGTTGTCTTTTCTTCTGCGTCGTCCTTACCAGCTTCTACACCTCCACATTTTTTGAATGCATCGCCTGGGTTGCAACACCAGATATCTGATGTTTCAGAGGATTCTACGTCTGTAGCGGAATCGCCAAATGTTCTATTTTCTTCGCAGAAGGTGCTGAAGACAAAAAAACTAGCTAATGTTCCTAGTTTGGGTTTTGGAGCATTGGTTTCGCCTGGGAGAGAGATATCATCGGGTCCTCAAATAATACAGCGTGAACCCCATCGTTGCCCAAGTTGTGGGGCTTATTCGAATCTGTACTGCAAGATCTTAATTGGTTCAGGTCAGTGGCAGTGTGTAATTTGTCGGAAGTTGAATGGAAGTGAGGGTGAATACGTAGCACCGAGCAAAGAAGATCTTTGTCATTTTCCAGAACTATCATCATCTATGGTTGATTATGTCAGAACTGGGAACCGGAGACCAGGATTTATTCCAGCTTCTGACTCAAGAACGTCTGCACCTATTGTTCTGGTTATTGACGAGTCTTTAGATGAGCCACATCTGCAGCATCTCCAGAGCTCCTTGCATGCTTTTATTGATTCAGTTTCCCCCACAACAAGAATTGGAATTATACTGTATGGTCGTACTGTATCAGTATATGATTTTTCAGAAGAATCTGTTGCCTCTGCTGATGTGCTTCCTGGTGATAAATCACCAACTCCGGAGTCTTTAAAAGCATTAATTTATGGAACAGGAATATATTTATCACCAATGCATGCCTCACTCCCTGTAGCGCATACGATATTTTCATCACTGAGACCTTATAAATCAAGCATTCCAGAAGCCTCTAGAGATAGATGCCTTGGTACTGCAGTTGAAGTTGCTCTTGCCATAATCCAAGGACCTTCAGCAGACGTGTCTCGAGGAGTGGTTAGAAGGTTGGGGGCTAATAGTAGAATTATTGTTTGTGCTGGTGGACCAAATACATATGGCCCTGGGTCAGTTCCCCATTCTGTCAGTCACCCAAATTACCTGCACATGGAAAAGTCTGCTCTAAATTGGATGGAGCATCTTGGTCATGAGGCCCATCAACAAAATACAGTGGTTGACATTCTATGTGCTGGAACGTGCCCTGTAAGAGTTCCTATCTTGCAGCCTCTTGCAAAAGCTTCTGGTGGTGTTTTGGTTCTTCATGATGACTTTGGGGAGGCCTTTGGTGTAAACTTGCAGAGGGCATCTGCTAGGGCTGCAGGTTCTCATGGTTTATTAGAAGTACGCTGTTCTGATGACATTCTAATCACCCAAGTCGTTGGTCCGGGCGAAGAGGCACATGTAGATACTCATGAAACCTTCAAAAATGACACCTCTCTTTACATTCAAATGCTAAGTGTAGAAGAATCCCAGAGCTTCGCACTCTCCATGGAGACTAAAAGAGACATAAAGAGTGATTTTGTATTTTTCCAGTTTGTTGTACAATATTCAAATGTTTATCAAGCTGACATTTCAAGAGTAATTACTGTCAGATTACTTACTGTTGATAGCTTATCAGAATATCTTGAAAGTGTTCAAGATGAAATAGCTGCAGTCCTTATTGCCAAGAGGACAGCTTTGCAAGCTAAAAGCCAGTCTGATGCAATAGATATGCGGGTTACAATAGATGAAAGAGTAAAAGATATTGCTTTGAAATTTGGTACCCTGGCACCAAAGTCGAAGATTTATCGATTTCCAAAGGAACTATCTTCAGTGCCAGAGCTGCTGTTTCACTTGAGAAGAGGCCCTCTTCTTGGAAGCATTGTTGGTCATGAAGATGAAAGGTCCGTATTGAGAAACTTGTTTTTGAATGCATCTTTTGACCTTTCCCTCCGTATGATAGCACCTCGCTGTTTAATGCACCGGGAGGGGGGTACTTTTGAAGAGCTTCCAGCATATGACCTAGCTATGCAGTCAGATGCTGCTGTTGTGCTCGACCATGGAACAGATGTCTTCATTTGGTTGGGTGCTGAGCTTGCAGCTGAAGAAGGAAAAAGTGCAGCTGCTTTAGCAGCTTGCAGAACATTAGCAGAAGAGCTTACTGAATCAAGGTTTCCAGCTCCCAGGATTCTTGCATTCAAGGAAGGGAGCTCTCAAGCTCGGTATTTTGTTTCTCGGCTGATTCCAGCACACAAGGACCCTCCTTACGAACAGGAGGCGAGATTTCCACAACTTAGAACATTATCGACAGAACAGAGAACAAAGCTGAAAAGTAGTTTTCTTCATTTCGATGATCCCAGCTTCTGTGAATGGATGCGAAGTTTGAAGTTGATCCCACCAGAACCAAGTTAA | 2610 | 44.21 | MAYTSQSSPGFSATQPDTPAPSSETNSIPPPLISTGPSRFPPKFQQEQMSSPSIRTPAAASPANGIKTGSPIPHLSTPPGPPVFTSPIRPAAVPFRTSPASPQPVVFSSASSLPASTPPHFLNASPGLQHQISDVSEDSTSVAESPNVLFSSQKVLKTKKLANVPSLGFGALVSPGREISSGPQIIQREPHRCPSCGAYSNLYCKILIGSGQWQCVICRKLNGSEGEYVAPSKEDLCHFPELSSSMVDYVRTGNRRPGFIPASDSRTSAPIVLVIDESLDEPHLQHLQSSLHAFIDSVSPTTRIGIILYGRTVSVYDFSEESVASADVLPGDKSPTPESLKALIYGTGIYLSPMHASLPVAHTIFSSLRPYKSSIPEASRDRCLGTAVEVALAIIQGPSADVSRGVVRRLGANSRIIVCAGGPNTYGPGSVPHSVSHPNYLHMEKSALNWMEHLGHEAHQQNTVVDILCAGTCPVRVPILQPLAKASGGVLVLHDDFGEAFGVNLQRASARAAGSHGLLEVRCSDDILITQVVGPGEEAHVDTHETFKNDTSLYIQMLSVEESQSFALSMETKRDIKSDFVFFQFVVQYSNVYQADISRVITVRLLTVDSLSEYLESVQDEIAAVLIAKRTALQAKSQSDAIDMRVTIDERVKDIALKFGTLAPKSKIYRFPKELSSVPELLFHLRRGPLLGSIVGHEDERSVLRNLFLNASFDLSLRMIAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAAEEGKSAAALAACRTLAEELTESRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRTLSTEQRTKLKSSFLHFDDPSFCEWMRSLKLIPPEPS | 869 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 17377578 | 17383120 | - | PI0011594.1 | Cmetu10g0535 | 367398 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmetu10g0535 | 869 | MobiDBLite | consensus disorder prediction | 1 | 101 | - | - | |
| Cmetu10g0535 | 869 | Pfam | Sec23/Sec24 beta-sandwich domain | 516 | 605 | IPR012990 | - | |
| Cmetu10g0535 | 869 | Gene3D | Severin | 736 | 837 | IPR029006 | - | |
| Cmetu10g0535 | 869 | Pfam | Sec23/Sec24 zinc finger | 190 | 228 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Cmetu10g0535 | 869 | CDD | gelsolin_like | 722 | 813 | - | - | |
| Cmetu10g0535 | 869 | CDD | trunk_domain | 264 | 507 | - | - | |
| Cmetu10g0535 | 869 | MobiDBLite | consensus disorder prediction | 74 | 88 | - | - | |
| Cmetu10g0535 | 869 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Cmetu10g0535 | 869 | Gene3D | von Willebrand factor, type A domain | 270 | 515 | IPR036465 | - | |
| Cmetu10g0535 | 869 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 149 | 865 | IPR037364 | - | |
| Cmetu10g0535 | 869 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 29 | 618 | - | - | |
| Cmetu10g0535 | 869 | Pfam | Sec23/Sec24 helical domain | 621 | 717 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Cmetu10g0535 | 869 | SUPERFAMILY | Helical domain of Sec23/24 | 620 | 720 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Cmetu10g0535 | 869 | Pfam | Sec23/Sec24 trunk domain | 272 | 498 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Cmetu10g0535 | 869 | Gene3D | - | 180 | 243 | - | - | |
| Cmetu10g0535 | 869 | SUPERFAMILY | vWA-like | 271 | 503 | IPR036465 | - | |
| Cmetu10g0535 | 869 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 180 | 254 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Cmetu10g0535 | 869 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 722 | 862 | IPR036180 | - | |
| Cmetu10g0535 | 869 | Gene3D | Sec23/Sec24 helical domain | 608 | 728 | - | - | |
| Cmetu10g0535 | 869 | FunFam | Protein transport protein SEC23 | 736 | 833 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmetu10g0535 | - | - | - | - | 0.0 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g1190 | . | . | . | . | . | . | . | . | . | . | . | Cma14g01465 | . | Car14g01301 | . | . | Cpe03g01233 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cme07g01901 | . | Blo07g00070 | Bda11g00442 | . | . | Bpe13g00734 | . | Bma06g01423 | Sed09g0135 | . | Cmo14g01504 | . | . | . | . | . | . | Bhi12g02569 | Tan06g2212 | Cmetu10g0535 | Lac12g1942 | Hepe03g0423 | . | Lcy13g0545 | . | . | . | . | . | . | . | . | . | . | . | |
| Vvi15g136 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Sed09g0135 | . | . | . | . | . | . | . | . | Bhi12g02569 | Tan06g2212 | Cmetu10g0535 | Lac12g1942 | Hepe03g0423 | . | Lcy13g0545 | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009005 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 33 |