Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0634 ATGCCAATGGCGAAAAACGATGCTGAACCGGCGCTTCAGAGCTCCGGCAAGAGGCTAAAATGCTCTAAGCACGATGATGAACAATACCATCTTGGTAATGAAGAAGAAGAAGAGGAACAGGTGAGTGAACTTCCATTGAAGCCCGGGCTTTTCTTCTACCCAATGACACCAACTTCCTTCGTCGTCTCCGATGCTCTTGAGCCCGATTTCCCAATCATCTACGTCAACAAAGTCTTCGAGATCTTCACTGGGTACCGTGCCGATGAGGTCCTCGGCCAGAATTGTCGGTTCTTACAATATAGAGATCCTCGTGCACAAAGGCGCCACCCTTTGGTTGATCCGGTGGTTGTTTCTGAAATCAGAAGATGTCTTGAGGAAGGTGTTGAATTCCAAGGTGAGCTCCTCAATTTCAGAAAGGATGGTACTCCTATGGTGAACAGGTTACGGCTTGCACCCATACATGATGATGATGGGACTGTAACACACATTATAGGAATTCAAGTGTTTTCCGAGACAAAGATAGACCTTAATCGGTTGTCATATCCCGTCTTCAAAGAAAATTGTGCCATTAAATATGATCTATCAGGCAAAAGTGCTCATTTGATTGACCAATCACCATTTGGTCACTATAAAGAAATATGTGGGATACTGCAGCTTTCAGATGAAGTCTTGGCCCATAATATTTTATCACGCTTGACACCCGAGATGATACGTCAATTGACGAAGAATGAGCATTTAAGGAAGATGGTATGTCAGAATGCATGGGGAAGAGAAGTGACGGGAACATTGGAACAAATGACAAAGAAACTCGGTTGGGGGCGCTTGGCCAGGGAACTTACAACTCTTGAAGCGGTTCGTTGGAGAAAAATGACAGTTGGAGGAGCCGTGGAGCCCTTACGTTGCAACTTTAGTGCTTGTGCAGCAGGTAATCGACTAGTATTATTCGGTGGGGAAGGAGTCAATATGCAGCCTATGGATGATACCTTTGTTCTCAATCTTGATGCTGCAAATCCCGAGTGGCGCAGAGTAAGCGTGAAATCCTCCCCACCTGGACGCTGGGGCCACACTCTATCATGTTTGAATGGTTCTTGGTTAGTGGTTTTTGGGGGATGTGGCAGTCAAGGATTGCTCAACGACGTGTTTGTACTCGATTTGGATGCTCAACAACCAACATGGAAAGAAATCTCTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATTGAAGGCTCGAAACTGGTAGTCTCAGGTGGATGCACAGATGCCGGTGTGCTTCTCAGTGACACATACTTGTTGGATCTAACAACAGACAAGCCAACATGGAGAGAGATTCCCACATCTGGGACACCCCCATCTAGATTGGGACATTCTCTTTCAGTTTATGGTCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGCGGACACTTACGCTTACGATCAGGCGAGGCATACACCATAGATTTAGAAGAGGAAGAACCCCAGTGGAGGCAACTCGAGTGCAGTGCATTCACCGGCATTGGCGGTCAGAGTGCTGTGGTTCCTCCACCAAGACTCGATCATGTAGCAGTCAGCATGCCCTGTGGAAGGATTATCATTTTTGGAGGCTCCATTGCCGGGTTACATTCACCTTCTCAACTATTCCTTCTTGATCCCGCCGAGGAGAAACCGTCATGGAGAATTCTCAACGTTCCTGGACAACCGCCTAAATTTGCTTGGGGCCACAGTACTTGCGTTGTTGGAGGGACACGGGTTTTGGTATTAGGCGGCCACACCGGAGAAGAATGGATACTCAATGAATTACATGAACTCTGTTTAGCTAGCAGACAAGATTCAGATCTTTGA 1860 46.88 MPMAKNDAEPALQSSGKRLKCSKHDDEQYHLGNEEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLNRLSYPVFKENCAIKYDLSGKSAHLIDQSPFGHYKEICGILQLSDEVLAHNILSRLTPEMIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTKKLGWGRLARELTTLEAVRWRKMTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEEEEPQWRQLECSAFTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1825521 1828311 + PI0011716.1 Cmetu10g0634 367497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0634 619 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 167 IPR035965 -
Cmetu10g0634 619 CDD PAS 56 166 IPR000014 -
Cmetu10g0634 619 FunFam Putative LOV domain-containing protein 277 482 - -
Cmetu10g0634 619 FunFam Putative LOV domain-containing protein 483 615 - -
Cmetu10g0634 619 ProSiteProfiles PAS repeat profile. 72 127 IPR000014 -
Cmetu10g0634 619 SUPERFAMILY Galactose oxidase, central domain 286 604 IPR011043 -
Cmetu10g0634 619 SMART pac_2 131 172 IPR001610 -
Cmetu10g0634 619 Gene3D - 278 483 IPR015915 GO:0005515
Cmetu10g0634 619 Pfam Kelch motif 524 571 IPR011498 GO:0005515
Cmetu10g0634 619 Pfam Galactose oxidase, central domain 300 350 - -
Cmetu10g0634 619 Gene3D - 484 614 IPR015915 GO:0005515
Cmetu10g0634 619 Gene3D PAS domain 54 178 - -
Cmetu10g0634 619 NCBIfam PAS domain S-box protein 71 166 IPR000014 -
Cmetu10g0634 619 Pfam Galactose oxidase, central domain 365 410 - -
Cmetu10g0634 619 Pfam Galactose oxidase, central domain 414 465 - -
Cmetu10g0634 619 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 40 613 - -
Cmetu10g0634 619 Pfam PAS domain 66 167 IPR000014 -
Cmetu10g0634 619 FunFam Adagio protein 1 50 178 - -
Cmetu10g0634 619 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0634 K12116 - - csv:101222712 1231.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0815 Cmetu-Chr5:5507446 Cmetu10g0634 Cmetu-Chr10:1825521 3.70E-233 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34