Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0662 ATGGATGATGAGGTGGTTCAGCGAGTTCTCCAGGAAGGCAGAGATTTTTACCAAAAACAGCCCTCCACTTTCACCTCTTCCTCCTCCATCCTTCAATCACTGCCTCTTCATGTGTCTTTCGATCATGGATATTATCTATTAGTGAAATCCATCCAAGAACTTAGAGAGAAAAAATATGGACTTGTAACAGTCGGCATTGGTGGTCCAAGCGGCTCTGGTAAAACCAGCTTAGCAGAGAAAGTGGCATCTGTAATTGGCTGTAATGTTGTATCAATGGAAAACTATCGTGATGGAGTTGATGAGGGGAATGATTTGGATTCAATAGACTTTGATCTTCTAGTTCAGAATCTTGAGGATTTGACAAATGGAAGGGACACCATGATCCCGGTTTTTGACTTTCATCTAAAGAAACGGGTCAGTTCAAAAATAATAAAGAGTGCTTCATCTGGGGTGGTAATCATTGATGGAACCTATGCATTACATGCAAAATTACGTTCTTTGCTAGATATTCGGGTGGCAGTGGTTGGTGGGGTACATTTTAACCTTCTTTCCAAAGTTCGACATGATATTGGAGATTCCTGTTCATTGGATTATCTTATTGATAGCATCTTTCCATTGTTTAGAAAGCACATAGAGCCGGACCTTCATCATGCCCAGATAAGAATTAATAACAGCTTTGTCTCATCATTTAGGGAGGCAATATACAAGCTAAAATGTAGAAGTGAGTTCCCAGATGTAGATTCTGCCCATGCTTTTCAAGGAAATAAAACACATATAGACAATTTTATTGAGATGTATCTTAGGCCTCCATCTGCAAGTGAAGAAGCACGTATAAATGACTGGATTAAAGTGCGACAATCGGGTATTAAGTACTACCTAGCACTTGGTGACCAGAGGATAGTTGACAAAAATTTTATTATCAGGCCTAAAGCTGAATTTGAGGTTGGACGGATGACTTTAGGTGGATTGCTGGACTTGGGCTATACAGTAGTGGTTGGTTATAAAAGGGCATCTATATCGGTAAATAAGGGCAATGTTTCTGTGTCACTTGAAACAATTGATTCTCTTGGTGAGACATTCATGGTGCTGCGAAGCTCAAATAGAAAAACAGTTGGAGAAGAAGTGTTGAGGATGGGTATCACAGGGTCTTGGATTACAAAGTCTTATCTGGAGATGATTCTGGAAAGAAAAGGTGTACCACGATTAAATACACCTCCACTTCTACCAAACACACCTCTGGCTAATAACCAAGAAAAGGTTGTCATTGCTCCCAGGCCCATCCGTGTTACTTCAAATCTTGTTTCTCGACTTGAGGATCTTTCTCAGCCATGGACCAGATCTCCAACAAAATCTCAAATGGAACCAGTAGTTGCAACGTGGCAATTTATTAGCGCTCCCCAATCTGATAATTTAGTGACTGATCCTGCCTCTTTCAGGGATTCTACGAGGCTTGCTCCAATGCCTGATTCATGTGACCTGGATCGAGGTTTGCTTTTAGCTGTTCAAGCGATTCAGGCGTTATTGGAGAACAAAGGTCTTCCTATTATTGTTGGAATTGGTGGTCCAAGTGGGTCAGGGAAGACTAGTTTAGCTCATAAAATGGCTAATATTGTTGGATGTGAAGTAATTTCGCTTGAAAGTTATTACAGATCAGAGCAAGTGAAGGATTTCAAGTATGATGATTTCAGCACACTTGATCTGTCGCTTCTATCCAAGAATATTGATGACATGAGAAAGGGTCGAAGAACAAAAGTACCGCTTTTTGACTTGGAGACTGGTGCTCGAAGTGGTTTTAAGGAGCTTGAAGTTTCTGAAGACTGTGGAGTGATAATTTTCGAAGGAGTATATGCTTTACATCCAGACATCAGGAAATCACTTGACTTATGGATTGCTGTTGTTGGAGGTGTTCATTCACATCTCATATCTCGAGTCCAAAGAGATAAATGTAAAGCAGGGTGTTTCATGTCACAAAATGACATAATGATGACAGTTTTTCCTATGTTCCAGCAGCACATTGAACCACATCTTGTTCACGCACATCTGAAAATACGGAATGACTTTGATCCTGTGCTTTCACCTGAGAGCTCATTATTTGTACTGAAGAGTAACAAGCAGGTTGCTTATCAAGATATACTCAAACTTCTTGAATCATCAAAGGCTTGCAGTTCTATACAAAATTTCATTGATATATATTTGAGGCTTCCAGGAATTCCTACAAATGGACAGTTGACAGAGAGTGATTGTATACGAGTTAGAATTTGTGAAGGCCGATTTGCATTGTTAATACGGGAGCCTATAAGAGAAGGGAATTTCATCATTCAACCTAAGGTGGACTTTGACATTAGTATTAGTACAGTCACTGGCCTTCTTAATCTTGGGTATCAAGCCATGGCTTATATTGAAGCATCTGCGTACATTTACCAAGATGGAAAGATTCTGATTGAGGTTGACCATTTACAACATGCTCCTTGTCCCTATCTCCAAATAAAAGGGGTTGATAAAGAAGCCGTTGCAGCAGCTGGTTCCATGCTCGAACTGAATGATTCTTATACTACAAAGAGCTATCTTCAAATAATTTTGGAAAGTTTGCCACCGAACCGGAGTTCTGGCCTAATCCATAATCATCAAGCTGCAAGGCTGCAAGAACTTGTGGAATTTATTCAATCTCAGGGAAGTAGTACAGCTTCAGAATCCTCCCCTAGTAGAGAAGCATCATCTCCATTGGAAGGGATCATTGAAGACATGCAGTCCAGAATTAGAAGACTTGAACGATGGCTTGCAATTAATACAGTAAGGACCCTTCCATTTCTCCCAACATTTTCATTTACACCAACACTACTATTCCTTTCTTTAGCCTTAACTTTGTGCTTTTGGTAG 2877 40.15 MDDEVVQRVLQEGRDFYQKQPSTFTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKYGLVTVGIGGPSGSGKTSLAEKVASVIGCNVVSMENYRDGVDEGNDLDSIDFDLLVQNLEDLTNGRDTMIPVFDFHLKKRVSSKIIKSASSGVVIIDGTYALHAKLRSLLDIRVAVVGGVHFNLLSKVRHDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRSEFPDVDSAHAFQGNKTHIDNFIEMYLRPPSASEEARINDWIKVRQSGIKYYLALGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYTVVVGYKRASISVNKGNVSVSLETIDSLGETFMVLRSSNRKTVGEEVLRMGITGSWITKSYLEMILERKGVPRLNTPPLLPNTPLANNQEKVVIAPRPIRVTSNLVSRLEDLSQPWTRSPTKSQMEPVVATWQFISAPQSDNLVTDPASFRDSTRLAPMPDSCDLDRGLLLAVQAIQALLENKGLPIIVGIGGPSGSGKTSLAHKMANIVGCEVISLESYYRSEQVKDFKYDDFSTLDLSLLSKNIDDMRKGRRTKVPLFDLETGARSGFKELEVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKCKAGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKLLESSKACSSIQNFIDIYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVTGLLNLGYQAMAYIEASAYIYQDGKILIEVDHLQHAPCPYLQIKGVDKEAVAAAGSMLELNDSYTTKSYLQIILESLPPNRSSGLIHNHQAARLQELVEFIQSQGSSTASESSPSREASSPLEGIIEDMQSRIRRLERWLAINTVRTLPFLPTFSFTPTLLFLSLALTLCFW 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9098730 9123187 + PI0024871.4 Cmetu10g0662 367525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0662 958 Gene3D - 62 240 IPR027417 -
Cmetu10g0662 958 Gene3D - 513 704 IPR027417 -
Cmetu10g0662 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 686 IPR027417 -
Cmetu10g0662 958 PRINTS Uridine kinase signature 541 552 - -
Cmetu10g0662 958 PRINTS Uridine kinase signature 637 647 - -
Cmetu10g0662 958 PRINTS Uridine kinase signature 514 531 - -
Cmetu10g0662 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 227 IPR027417 -
Cmetu10g0662 958 SMART AAA_5 513 666 IPR003593 GO:0016887
Cmetu10g0662 958 SMART AAA_5 60 210 IPR003593 GO:0016887
Cmetu10g0662 958 Pfam Phosphoribulokinase / Uridine kinase family 106 222 IPR006083 GO:0005524|GO:0016301
Cmetu10g0662 958 Pfam Phosphoribulokinase / Uridine kinase family 516 683 IPR006083 GO:0005524|GO:0016301
Cmetu10g0662 958 PANTHER URIDINE KINASE 494 681 - -
Cmetu10g0662 958 CDD UMPK_like 63 225 - -
Cmetu10g0662 958 CDD UMPK_like 516 686 - -
Cmetu10g0662 958 SUPERFAMILY CYTH-like phosphatases 715 858 IPR033469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0662 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0662 Cmetu-Chr10:9098730 Cmetu10g1186 Cmetu-Chr10:19943291 2.80E-54 dispersed
Cmetu10g0662 Cmetu-Chr10:9098730 Cmetu02g1099 Cmetu-Chr2:23060668 2.50E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g983 . . . . . . . . . . . . . . Sed06g0245 . . Bhi07g00114 Tan04g1664 Cmetu10g0662 Lac13g1622 . . . . . . . . . . . . . . . . Chy10g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35