Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0686 ATGCAACGGAGGCAACCCACTTCGACTCGTCGCAATGGAAGCTTTCCATTTGCTGGGGCGCTCAATGCTAAATCAAAATCATCTCCCTTGCTATCTGTGTGCTTGGTCCTTGTGGGAGCAATTCTTCTACTTGTCTATGCTTTTAGTGGACCAGGTTTATTTGGAGGCACCAAGATAGTCAGCAAGATTGAAGGTGATTTTTCATGCACATTGGAGTTGCAAAGAGCAATACCCATCTTAAAGAAAGCATTTGGCGATAGCATGCGCAAAGTTTTGCATGTTGGTCCTGATACCTGTTCTGTGGTATCCAAGCTGTTGAAAGAAGGTGAAACAGAAGCATGGGGCATAGAACCATACGACATAGAAGATGCTGATGGAAACTGCAAATCACTTGTGAACAAAGGCATTGTACGTGTGGCAGATATCAAATTCCCTCTACCCTATAGGTCAAAGTCATTTTCCCATGTTATTGTGTCAGATGCATTGGACTACCTATCCCCCAAATACCTGAACAAAACTCTTCCAGAATTTGCAAGGGTTTCTTCTGATGGTCTTGTTATATTTACTGGTTCCCCTGGTCAGCAGAAAGCTAAAGTAAATGAGTTATCAAAGTTTGGACGACCGGCCAAAATGCGGAGCTCGTCTTGGTGGATTCGATTTTTTGTCCAAACAAGCTTAGAAGAGGACGAAAGTGCTGCCAAGAAATTTAAGCAAGCAGCATCCAAGCAGTCCTACAAGCCCGGCTGTCAAGTTTTCCATCTCAATTCATACCATTGA 777 43.5 MQRRQPTSTRRNGSFPFAGALNAKSKSSPLLSVCLVLVGAILLLVYAFSGPGLFGGTKIVSKIEGDFSCTLELQRAIPILKKAFGDSMRKVLHVGPDTCSVVSKLLKEGETEAWGIEPYDIEDADGNCKSLVNKGIVRVADIKFPLPYRSKSFSHVIVSDALDYLSPKYLNKTLPEFARVSSDGLVIFTGSPGQQKAKVNELSKFGRPAKMRSSSWWIRFFVQTSLEEDESAAKKFKQAASKQSYKPGCQVFHLNSYH 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12573809 12580452 - PI0026465.1 Cmetu10g0686 367549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0686 258 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 1 258 IPR044689 GO:0008168|GO:0045488
Cmetu10g0686 258 Gene3D Vaccinia Virus protein VP39 71 248 IPR029063 -
Cmetu10g0686 258 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 87 226 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0686 K23871 - - csv:101212233 493.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0443 Cmetu-Chr1:1209449 Cmetu10g0686 Cmetu-Chr10:12573809 1.30E-99 dispersed
Cmetu07g2246 Cmetu-Chr7:191858 Cmetu10g0686 Cmetu-Chr10:12573809 3.70E-39 dispersed
Cmetu10g0686 Cmetu-Chr10:12573809 Cmetu08g0650 Cmetu-Chr8:20448968 4.80E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g808 . . . . . Bpe12g00729 . . Cmo19g00531 Cmo11g01435 . . . . Sed14g0958 Cpe04g00340 Cpe15g00414 Bhi05g00998 Tan02g1073 Cmetu10g0686 Lac12g0133 Hepe02g0670 . . Cla02g00720 Cam02g0766 Cec02g0764 Cco02g0793 Clacu02g0762 Cmu02g0755 Cre02g1069 Cone12ag1020 Cone8ag1050 . . Lsi03g00637 Csa07g00655 . Cme01g00148 . . Bda15g00472 . . . . Bma08g00021 Sed07g1157 Cmo04g00451 . Cma11g01687 Cma19g00518 Car11g01153 Car19g00393 . Cpe01g00378 Bhi11g01089 Tan01g0592 Cmetu07g2246 . . Mch10g0397 . . . . . . . . . . Chy01g00157 Cme07g02223
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000838 3 2 2 3 2 2 4 2 2 2 2 2 3 2 3 4 2 4 4 2 3 3 2 2 2 2 2 13 4 2 87