Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0742 ATGGTTGGGATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCTAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGCATTGTTAGCAATTGGGATGACATGGAAAAGATTTGGCATCATACTTTCTATAACGAGCTTCGCGTTGCCCCCGAGGAGCACCCGGTTCTCCTAACTGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAAACTTTCAATACTCCAGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTATTGGACTCTGGTGATGGTGTCAGTCACACTGTTCCTATATACGAAGGGTATGCCCTCCCACACGCCATCCTTCGTCTCGACCTGGCAGGTCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACAACAACTGCTGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATCGCTCTTGATTATGAACAAGAGATGGAAACATCCAAGACCAGCTCGTCCGTTGAAAAGAGCTACGAATTGCCTGATGGACAGGTGATCACCATTGGCGCAGAGAGATTCAGATGCCCTGAAGTTCTTTTCCAACCCTCCATGATCGGAATGGAAGCAGCAGGCATTCATGAGACTACATATAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTACGGTAACATTGTCCTATCTGGTGGTTCAACCATGTTCCCCGGTATTGCTGATAGAATGAGCAAGGAAATCTCAGCCCTCGCCCCTAGCAGCATGAAGATAAAGGTTGTGGCCCCACCGGAGAGAAAGTACAGTGTCTGGATCGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAAGCGGAATATGATGAATCTGGACCGTCGATCGTGCACAGGAAATGCTTCTAA 999 46.35 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15970753 15974182 + PI0000225.1 Cmetu10g0742 367605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0742 332 SUPERFAMILY Actin-like ATPase domain 1 110 IPR043129 -
Cmetu10g0742 332 PANTHER ACTIN 8 325 IPR004000 -
Cmetu10g0742 332 SUPERFAMILY Actin-like ATPase domain 104 332 IPR043129 -
Cmetu10g0742 332 FunFam Actin, alpha skeletal muscle 210 285 - -
Cmetu10g0742 332 Gene3D - 95 295 - -
Cmetu10g0742 332 ProSitePatterns Actins signature 2. 313 321 IPR004001 -
Cmetu10g0742 332 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Cmetu10g0742 332 FunFam Actin, alpha skeletal muscle 286 332 - -
Cmetu10g0742 332 CDD NBD_sugar-kinase_HSP70_actin 31 138 - -
Cmetu10g0742 332 Gene3D Actin; Chain A, domain 4 137 228 - -
Cmetu10g0742 332 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Cmetu10g0742 332 FunFam Actin, alpha skeletal muscle 1 133 - -
Cmetu10g0742 332 Gene3D - 2 326 - -
Cmetu10g0742 332 Pfam Actin 7 332 IPR004000 -
Cmetu10g0742 332 SMART actin_3 1 332 IPR004000 -
Cmetu10g0742 332 PRINTS Actin signature 97 116 IPR004000 -
Cmetu10g0742 332 PRINTS Actin signature 6 17 IPR004000 -
Cmetu10g0742 332 PRINTS Actin signature 18 40 IPR004000 -
Cmetu10g0742 332 PRINTS Actin signature 72 85 IPR004000 -
Cmetu10g0742 332 PRINTS Actin signature 193 209 IPR004000 -
Cmetu10g0742 332 FunFam Actin, muscle 137 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0742 K10355 - - csv:101220611 659.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0742 Cmetu-Chr10:15970753 Cmetu11g0408 Cmetu-Chr11:30383063 4.10E-186 dispersed
Cmetu10g0742 Cmetu-Chr10:15970753 Cmetu09g0809 Cmetu-Chr9:18358242 1.40E-189 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.1e-215 743.0
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.1e-215 743.0
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.2e-212 734.9
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 2.9e-212 734.6
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT2G37620 95.8 3.5e-186 647.9
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 4.0e-214 740.7
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.9e-214 740.0
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.6e-213 736.5
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 7.1e-211 729.9
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT5G59370 96.4 2.7e-186 648.3
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.8e-214 741.9
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 3.1e-214 741.1
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.4e-213 737.6
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 3.2e-211 731.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G46520 96.7 1.2e-186 649.4
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.6e-215 744.2
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.0e-214 740.7
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 3.4e-213 737.6
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.9e-213 736.1
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.9e-213 736.1
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.2e-212 734.9
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G12110 97.0 8.4e-188 653.3
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.1e-209 723.8
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.1e-209 723.8
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 5.1e-209 723.8
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.9e-208 721.8
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.9e-208 721.8
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 9.6e-208 719.5
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G18780 93.1 6.3e-183 637.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.7e-209 725.3
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.6e-209 723.4
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 3.3e-208 721.1
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.3e-208 720.7
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT1G49240 93.1 6.3e-183 637.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.7e-217 749.6
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.7e-217 749.6
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 2.4e-214 741.5
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.9e-214 740.0
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.0e-213 738.4
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 6.4e-212 733.4
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT5G09810 95.8 6.0e-186 647.1
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 8.3e-58 219.9
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 2.7e-56 214.9
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 9.5e-54 206.5
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 1.1e-57 219.5
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 6.6e-55 210.3
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT4G29350 74.0 3.3e-54 208.0
Cmetu05g1709 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 1.3e-37 152.5
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT4G29340 85.8 3.2e-65 244.6
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT4G29340 70.9 4.4e-54 207.6
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 1.6e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276