Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0761 ATGGGGAAGAAGCTTGATGCACTGCTGGGAAGAAGCTTTAAGACCAAAAGGTTCAAAGCTCTTGTGAATTTGGCCATATCTCGGCTCGCTGTTCTTGCAAACCAGCGCCAGGTTAGATCCTCCCAGGCTCGTTCTGATGTAGTTCAGTTGCTGCAGCTTGGCCACCATGAGAGAGCCCTCTTTCGTGTGGAGCAAGTTATTAAGGACCAGAAACTGTTGGATGCGTATGCTATAATAGAGAGTTATTGTGAGGTTGTATTGGAGAGAATCAAGCTACTTGAACATGAGAGAGAATGCCCAGAAGAACTTAAGGAAGCAATTTCGGGTTTGATTTTTGCATCTTCAAGATGTGGGGATTTCCCAGAGCTTATAGAGATTCGTTCAGTTATTACCAGTCGTTTTGGGAAGGAGTTTACGGGTCGTGCTATTGAGTTACGCAACAATTGTGCTGTTGGTCCAATGATAGTACAGAAGCTGTCAGCTAGGTCACCAAGCTTGGAGATCAAACTGAAGTTACTTAAACAAATTGCTTCTGAACATGGCATTACTTTGAAAGATTTGGAAGCTTATGAAGTTTCAACTGAGGACAAAGTTATGGTTGTGGCAGAAGAGACGAAGGAACAACCACAGCAGGAAACCAAAGTGGAAGGTGTTTTTCAGATTTTACCTGAAGAGATAGAGAAGGACAATCGGTATGCTGATTCGATGAGAGGAAGAAAGAAGTACAAAGACGTGGCGGATGCTGCTCAAGCAGCATTCGAGTCGGCTGCTTATGCAGCAGCTGCAGCAAGAGCTGCTGTTGAACTCTCTCAATCTAAATCACTTGATCATGATGACCTGAATAATCTGAGTCCAAAACCAAGAAAATCCACTGAAACTCTTGAATCCAAGAACACTGAGAAAGAAATGGAATCAGAAAACAAGGAAACCCATAGTGGAAGTACGTCTATAGAAGTGGATGAGAGTGAAAATGGAACAGAATTGAAGCAACCAGTGTCTTCTTCTAGTTCGGAAGCCGGGGATGCTAGTTTAAAGGAAAATGAGATTCCAATTGAAGCAATAAATATTATCGAACTGCTGGAGAAGGATTTGATTTTTGACGAGACTGATGTTGATGCCGCGAATGGAGAAAGCAGCAGTTTGGCTCTTGATGAGAGGAATTCGAGCTTTGAGTGTCGTGAGAAGATGGAATCAGAGTCTGCAGAGATCACAGCAAACAATGAGGAATCTGTTAACAACGATACTGCACAAAATGTAAGCATAGGAAATGAGGCTGTTATAAGGACAATAGATGTCCATGGGCACTGA 1308 42.81 MGKKLDALLGRSFKTKRFKALVNLAISRLAVLANQRQVRSSQARSDVVQLLQLGHHERALFRVEQVIKDQKLLDAYAIIESYCEVVLERIKLLEHERECPEELKEAISGLIFASSRCGDFPELIEIRSVITSRFGKEFTGRAIELRNNCAVGPMIVQKLSARSPSLEIKLKLLKQIASEHGITLKDLEAYEVSTEDKVMVVAEETKEQPQQETKVEGVFQILPEEIEKDNRYADSMRGRKKYKDVADAAQAAFESAAYAAAAARAAVELSQSKSLDHDDLNNLSPKPRKSTETLESKNTEKEMESENKETHSGSTSIEVDESENGTELKQPVSSSSSEAGDASLKENEIPIEAINIIELLEKDLIFDETDVDAANGESSSLALDERNSSFECREKMESESAEITANNEESVNNDTAQNVSIGNEAVIRTIDVHGH 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20299129 20301399 - PI0017271.1 Cmetu10g0761 367624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0761 435 Gene3D - 6 192 IPR042277 -
Cmetu10g0761 435 MobiDBLite consensus disorder prediction 317 342 - -
Cmetu10g0761 435 MobiDBLite consensus disorder prediction 276 344 - -
Cmetu10g0761 435 Pfam Regulator of Vps4 activity in the MVB pathway 19 182 IPR005061 GO:0015031
Cmetu10g0761 435 Coils Coil 393 413 - -
Cmetu10g0761 435 MobiDBLite consensus disorder prediction 276 316 - -
Cmetu10g0761 435 PANTHER IST1 FAMILY MEMBER 17 322 IPR005061 GO:0015031
Cmetu10g0761 435 FunFam Vacuolar protein sorting-associated protein IST1 9 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0761 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0417 Cmetu-Chr3:22520952 Cmetu10g0761 Cmetu-Chr10:20299129 4.30E-34 dispersed
Cmetu03g0613 Cmetu-Chr3:16734362 Cmetu10g0761 Cmetu-Chr10:20299129 1.90E-72 dispersed
Cmetu06g0519 Cmetu-Chr6:16722895 Cmetu10g0761 Cmetu-Chr10:20299129 4.00E-61 dispersed
Cmetu09g1687 Cmetu-Chr9:15024099 Cmetu10g0761 Cmetu-Chr10:20299129 1.20E-20 dispersed
Cmetu10g0761 Cmetu-Chr10:20299129 Cmetu11g0152 Cmetu-Chr11:13286916 4.90E-30 dispersed
Cmetu10g0761 Cmetu-Chr10:20299129 Cmetu03g0284 Cmetu-Chr3:16703580 9.20E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g289 . . . . . Bpe10g00940 . Bma15g00084 . Cmo18g01044 . Cma18g01031 . Car18g00954 Sed06g1874 Cpe09g00289 Cpe01g01779 Bhi07g01341 Tan04g0880 Cmetu10g0761 Lac13g0479 Hepe01g1205 . . Cla05g02312 . Cec05g2507 Cco05g2549 Clacu05g2480 Cmu05g2341 Cre05g2458 Cone13ag0839 . . Cone9ag0468 Lsi04g00267 Csa05g02599 Chy10g01134 Cme10g00273 Blo06g00966 . . . Bpe11g01695 Bpe02g02080 . . . Cmo04g02140 . Cma04g02037 . Car04g01983 . . . . . . . . . . . . . . . . . . . Chy09g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012784 1 2 0 0 1 0 2 0 0 1 1 1 2 1 1 2 1 0 1 0 1 1 1 1 1 1 1 1 1 2 28