Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0768 ATGGGGAAGAAAGGGAGTTGGTTTTCTGCAGTGAAAAAGGTTCTCAGTCAGCCTTCTGAGAAGAAAGACAAGAAACCAGACAAACCTAAGAAAAAATGGTTCCAAAAGGAGGAGAGTGTAGAGGATGTGATTTCCTTTTTGGAACAATCTCCATTGGACGTTCCTGTACAACCTCCTATAGAAGATGATGTCAAACAAATCGAACCAGAGAATGAACCAAGCGAGCTTGTGCATTCGGAGGCTGCAGAGCCGGTTGTTGCTGAAGCTCCACCGGCTGTGGCAGTTGAATGTCCACCTAGTCCTAGTCCTGTCTCCTGTCGGCCAGAAATGTCGGAGGAAACAGCAGCTATTATGATTCAAACTGCATTTCGTGGATATACGGCAAGGAGAGCACTGAGAGCACTCAAAGCGTTGATGAGATTGAAGACGTTGGTACAAGGGCAGTCTGTCAAACGGCAAGTGGCCTCTACTTTAAAATGCATGCAGACCCTTACTCATTTACAGTCGGAGATTCGTGCAAGGAGAATAAGAATGTCGGAAGAAAATCAGGCCCTTCTCCGGCAACTTCGTAACAAACGTGAGAAAGATCTCGAGAAGTTAAAATTTACTATGGATGATAACTGGAATCATAGCACCCAATCTAAAGCACAAATTGAAGCTAAACTATTGAACAAGCATGAAGCTGCAATAAGAAGAGAAAGGGCTCTGGCTTATGCTTACTCTCATCAGCAAACATGGAAGAACTCATCAAAAACTGCAACCCCCACCGTCATGGATCCAAACAATCCGCACTGGGGTTGGAGTTGGTTGGAGAGGTGGATGGCAGCTCGTCCATGGGAATCTCGAAGCACCACAGATCAGCTGGATGACATTTCTGTCACGAGTGTTGCAACTCGTGCATCTGTGGTCGACATACTCCAAATTTATGCTCGTCGTGATCAGAAACCTTCTACCAAGCTTTCTCCAAGATCTCCTACAAACCAAAAGTCAAGCCAATGGCATAAGCACTACTCACCTTCAACTCCCAAGGCACTGTCTTCATCATCTAGCAGAAAGAAAACAAATGCAGCCAACTCAAGGATAAGTAGCTGGGGCGGGGACGATGACATAAGGAGCACCACTAGTGTCAAATCAAAGCTCTCACGGAGGCATACTATTTCAGGGTCATCATTTAGGGATGATGAAAGCCTTACCAGTTTACCTTCAGTTTCAAGTAAGGTGACGCCATCGAAGGCTGTGAAAACTCGGTCGCGGTTGGCAAGTTCATCTAGAACAGAGAAGAAAGGAACATTTGAAAATGGGTATGTAAGTGCAGGTTCTGCAAAGAAGCGGCTTTCCTTCTCAACTTTTCCCGTTAAGCCAAGGAGGCAATCTAGTCCTCCAATTGTTAATACTAGCTAA 1401 45.32 MGKKGSWFSAVKKVLSQPSEKKDKKPDKPKKKWFQKEESVEDVISFLEQSPLDVPVQPPIEDDVKQIEPENEPSELVHSEAAEPVVAEAPPAVAVECPPSPSPVSCRPEMSEETAAIMIQTAFRGYTARRALRALKALMRLKTLVQGQSVKRQVASTLKCMQTLTHLQSEIRARRIRMSEENQALLRQLRNKREKDLEKLKFTMDDNWNHSTQSKAQIEAKLLNKHEAAIRRERALAYAYSHQQTWKNSSKTATPTVMDPNNPHWGWSWLERWMAARPWESRSTTDQLDDISVTSVATRASVVDILQIYARRDQKPSTKLSPRSPTNQKSSQWHKHYSPSTPKALSSSSSRKKTNAANSRISSWGGDDDIRSTTSVKSKLSRRHTISGSSFRDDESLTSLPSVSSKVTPSKAVKTRSRLASSSRTEKKGTFENGYVSAGSAKKRLSFSTFPVKPRRQSSPPIVNTS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21758214 21762313 + PI0019211.1 Cmetu10g0768 367631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0768 466 MobiDBLite consensus disorder prediction 451 466 - -
Cmetu10g0768 466 MobiDBLite consensus disorder prediction 319 371 - -
Cmetu10g0768 466 MobiDBLite consensus disorder prediction 16 38 - -
Cmetu10g0768 466 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Cmetu10g0768 466 MobiDBLite consensus disorder prediction 1 38 - -
Cmetu10g0768 466 MobiDBLite consensus disorder prediction 314 466 - -
Cmetu10g0768 466 Coils Coil 175 195 - -
Cmetu10g0768 466 MobiDBLite consensus disorder prediction 379 419 - -
Cmetu10g0768 466 PANTHER IQ-DOMAIN 5-RELATED 1 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0768 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1332 Cmetu-Chr7:7810911 Cmetu10g0768 Cmetu-Chr10:21758214 4.00E-27 dispersed
Cmetu09g0362 Cmetu-Chr9:17585457 Cmetu10g0768 Cmetu-Chr10:21758214 4.90E-108 dispersed
Cmetu09g0457 Cmetu-Chr9:10853883 Cmetu10g0768 Cmetu-Chr10:21758214 7.40E-09 dispersed
Cmetu10g0768 Cmetu-Chr10:21758214 Cmetu11g0606 Cmetu-Chr11:885017 4.70E-23 dispersed
Cmetu10g0768 Cmetu-Chr10:21758214 Cmetu08g1476 Cmetu-Chr8:16562102 3.20E-64 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0768 . 112 281 IQD Protein Family AT3G09710 58.2 7.1e-51 198.7
Cmetu09g0362 . 1 470 IQD Protein Family AT3G52290 53.3 3.8e-99 359.0
Cmetu02g0865 . 1 408 IQD Protein Family AT3G22190 57.1 2.2e-96 349.7
Cmetu07g0147 . 1 438 IQD Protein Family AT2G26180 60.2 2.3e-117 419.5
Cmetu07g1332 . 40 216 IQD Protein Family AT2G33990 55.0 5.4e-48 188.3
Cmetu07g1332 . 43 216 IQD Protein Family AT3G15050 63.3 9.0e-56 214.2
Cmetu11g0481 . 1 511 IQD Protein Family AT4G00820 50.6 5.9e-110 395.2
Cmetu06g1191 . 1 467 IQD Protein Family AT4G00820 50.3 6.9e-103 371.7
Cmetu02g1708 . 1 375 IQD Protein Family AT3G16490 50.1 1.9e-62 236.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012991 0 3 0 0 0 1 2 0 0 1 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 3 0 28