Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0777 ATGGCTTCCACCTCTTCCTCCGCCTCCACCCACCACCTCGACGCATCACTCGTCATCGCCACCAGATCAGACACTACTGCCGCCGCCACAGCCGCAGCCCGTTCTACTAAAGATCGTCACACTAAAGTCGACGGTCGTGGCCGTCGCATCCGTATGCCGGCAACTTGTGCCGCTAGGGTTTTCCAATTGACGCGTGAATTAGGCCATAAATCCGACGGTGAGACTATTGAGTGGCTTCTTCAACAAGCTGAGCCGGCTATAATCGCCGCCACTGGTACTGGTACAATTCCGGCTAATTTCTCCTCCTTGAATATCTCGATTCGTAGTAGTGGATCTACTCTCTCTGCTCCTCCTTCCAAATCCGCTCCTCATTCCTTTCATGGCGCTGCTTTGGCTCTCGCTCATCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCACCAGCAACAGCAACAACAACAGCATCAGCTCAATTTAATGACCGCTGATCAAATCGGCGAAGGGTTACCTAGCGGCGGAGGAGAATCGACGGATAACTATATGAGAAAACGATTCAGAGAGGATTTGTTTAAAGAAGATACACAATCTCCAGGGGAAAGTAGTGGAGGCGGTGGATCTCCTAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACAACAACCATCGGCGTCTTCATCGGGATTACTCCGGCCTGGAGCGGCGATGTGGGCGGTGGCGACACCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGGCAGGTTCCGGCGGGGGAAATGTGGGGAATTCTTCTGGAGGCGGCGGCGGCGGCGGCGGCGGTGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACGAGTAGTAACACATTGCAGGCGCCGTTGCATTTGATGCCGAGATTCAATATACCTGGAGGTGTGGAAATTCAGGCAGCGGCGGCGGGAGGAGGAAGAGGCGGCGGTGGGCAATTACAATTGGGTTCGATGTTGATGCAACAAACGGCGGGAGGCGGTGGCGGCGGCGGTGGTTTGGGGGTGTCGGAGACGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTATAATTCAAGATCAGGAAGTGATTATGAGGATGAGAGAGAGAAGGGTAGTTTTCTTTTGTACATGATTGAGAGTGAGAATGTATAG 1209 53.02 MASTSSSASTHHLDASLVIATRSDTTAAATAAARSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGAALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHQLNLMTADQIGEGLPSGGGESTDNYMRKRFREDLFKEDTQSPGESSGGGGSPKAMKSDLQLEKQQQQPSASSSGLLRPGAAMWAVATPGPSSGASNTFWMLPVTAGSGGGNVGNSSGGGGGGGGGGGLEAHQMWPFSTSSNTLQAPLHLMPRFNIPGGVEIQAAAAGGGRGGGGQLQLGSMLMQQTAGGGGGGGGLGVSETNLGMLAALNAAYNSRSGSDYEDEREKGSFLLYMIESENV 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17514972 17516664 - PI0027610.1 Cmetu10g0777 367640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0777 402 ProSiteProfiles TCP domain profile. 36 90 IPR017887 -
Cmetu10g0777 402 MobiDBLite consensus disorder prediction 220 236 - -
Cmetu10g0777 402 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 368 IPR005333 GO:0003700
Cmetu10g0777 402 MobiDBLite consensus disorder prediction 196 238 - -
Cmetu10g0777 402 Pfam TCP family transcription factor 35 166 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0777 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1507 Cmetu-Chr2:23752579 Cmetu10g0777 Cmetu-Chr10:17514972 2.20E-37 dispersed
Cmetu09g1538 Cmetu-Chr9:9893539 Cmetu10g0777 Cmetu-Chr10:17514972 1.20E-28 dispersed
Cmetu10g0777 Cmetu-Chr10:17514972 Cmetu12g0790 Cmetu-Chr12:402509 5.10E-34 dispersed
Cmetu10g0777 Cmetu-Chr10:17514972 Cmetu10g1669 Cmetu-Chr10:19329286 1.70E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1538 . 43 260 TCP Transcription Factor Family AT5G23280 62.2 1.7e-64 243.0
Cmetu10g1064 . 34 256 TCP Transcription Factor Family AT5G23280 59.6 7.6e-60 227.6
Cmetu11g0225 . 56 314 TCP Transcription Factor Family AT2G45680 53.4 5.2e-62 235.3
Cmetu10g1669 . 69 163 TCP Transcription Factor Family AT3G47620 89.7 9.0e-41 165.2
Cmetu12g0790 . 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.3e-39 161.4
Cmetu10g0777 . 35 154 TCP Transcription Factor Family AT3G47620 65.9 1.0e-36 151.8
Cmetu10g0777 . 35 136 TCP Transcription Factor Family AT1G69690 77.9 6.9e-37 151.8
Cmetu06g1199 . 43 296 TCP Transcription Factor Family AT3G27010 54.6 3.6e-59 225.7
Cmetu10g1064 . 4 254 TCP Transcription Factor Family AT5G08330 55.7 1.3e-64 243.4
Cmetu09g1538 . 30 259 TCP Transcription Factor Family AT5G08330 60.6 2.9e-64 242.3
Cmetu10g0777 . 34 268 TCP Transcription Factor Family AT1G35560 50.2 8.8e-43 171.4
Cmetu02g1260 . 40 139 TCP Transcription Factor Family AT5G60970 76.2 2.1e-39 160.2
Cmetu07g0568 . 38 131 TCP Transcription Factor Family AT3G02150 77.1 9.8e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8613 PF03634 TCP 3.60E-39 No_clan Cmetu TF