Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0790 ATGGTTTTTCCTCCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCATCAAACGGGAGGAAATGACACTGCAGAGGATTCTGGTCAGGTTTTACTACCTCCGCCACCGGGGGGTGGGGGAGGTGGTGACGGTGTTGGTGTTGGTGGTGGTACTGGGTCGATTAGGCCGGTTTCCATGACTGATCGGGCTCGGTTGGCAAAGATTCCGCAGCCAGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGACTTGTCGTCGGTATTGGACACGCGGTGGTGCACTGAGGAATGTTCCGGTGGGTGGTGGCTGCCGGAGGAACAAGAGAACCAAATCTCGGAATCGGTCGAAGTCTCCGGCAGCCAGTGAACGACAATTATTAGGTGGATCAACTAATTCCACTGCTGCAGTTTCACTTTCAACACAACCCCATTTGCCGTTTTTGTCTTCCTTACATAATTTCTCTACTTACGGCCTCAATTTGGGGATAATTCCGCCTCAAGCTCCTCCAACCAGCGGTGGCTCTGCTGCCGGATCGGGAGTGGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACAACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTGCTTTACACTTTCGAACAACCCGAAGGTACCATGACTCGGTATAATCTCGGCGGGTTCTCAAGATTAGGGATTGAAAACGACATTGGAATGACAACGGAGGCTGGGGCAGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGGGAAGAATTTTCAGTTTTGGGTTGGTGGCGGTGGCGGAAACGACGTAAATGCATGGAGTGGTGGCGGCAGTGGCGGTGGCGATCTTCATGGCTTCTCCTCATCCTCCGCCAGCCACTTATTGAGACAGTAA 978 49.49 MVFPPLPSYLDPPNWQPLTNHQTGGNDTAEDSGQVLLPPPPGGGGGGDGVGVGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLGGSTNSTAAVSLSTQPHLPFLSSLHNFSTYGLNLGIIPPQAPPTSGGSAAGSGVDVHEFQGDHWRLQQPQQFPLLANDQQPNLLYTFEQPEGTMTRYNLGGFSRLGIENDIGMTTEAGAVKVEESKGMNLGKNFQFWVGGGGGNDVNAWSGGGSGGGDLHGFSSSSASHLLRQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15962654 15964929 + PI0005542.1 Cmetu10g0790 367653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0790 325 MobiDBLite consensus disorder prediction 124 154 - -
Cmetu10g0790 325 Pfam Dof domain, zinc finger 80 134 IPR003851 GO:0003677|GO:0006355
Cmetu10g0790 325 MobiDBLite consensus disorder prediction 1 52 - -
Cmetu10g0790 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 73 209 IPR045174 GO:0003700|GO:0006355
Cmetu10g0790 325 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Cmetu10g0790 325 MobiDBLite consensus disorder prediction 13 30 - -
Cmetu10g0790 325 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g1927 Cmetu-Chr8:22197890 Cmetu10g0790 Cmetu-Chr10:15962654 2.20E-46 dispersed
Cmetu09g1587 Cmetu-Chr9:18256217 Cmetu10g0790 Cmetu-Chr10:15962654 4.00E-36 dispersed
Cmetu10g0790 Cmetu-Chr10:15962654 Cmetu12g0342 Cmetu-Chr12:23503487 9.30E-42 dispersed
Cmetu10g0790 Cmetu-Chr10:15962654 Cmetu11g2570 Cmetu-Chr11:6546425 1.60E-38 wgd
Cmetu10g0790 Cmetu-Chr10:15962654 Cmetu08g1957 Cmetu-Chr8:16170331 2.40E-42 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g2109 . 17 177 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.4e-44 176.4
Cmetu04g2899 . 6 164 C2C2-Dof Transcription Factor Family AT1G29160 50.9 1.4e-39 159.8
Cmetu09g0093 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.9e-42 168.7
Cmetu12g2109 . 17 177 C2C2-Dof Transcription Factor Family AT2G34140 55.3 1.7e-42 169.5
Cmetu04g2899 . 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.5e-38 155.6
Cmetu08g1927 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 65.2 2.6e-39 159.8
Cmetu10g0790 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 61.7 3.4e-39 159.5
Cmetu09g0093 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 8.0e-44 174.9
Cmetu12g2016 . 1 108 C2C2-Dof Transcription Factor Family AT5G62940 65.4 9.3e-38 154.8
Cmetu08g1957 . 42 122 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.2e-37 153.7
Cmetu10g0790 . 1 132 C2C2-Dof Transcription Factor Family AT5G02460 62.6 8.4e-37 151.8
Cmetu08g1957 . 43 134 C2C2-Dof Transcription Factor Family AT3G55370 74.5 6.0e-37 152.1
Cmetu08g1927 . 53 135 C2C2-Dof Transcription Factor Family AT3G55370 80.7 7.8e-37 151.8
Cmetu02g1182 . 28 332 C2C2-Dof Transcription Factor Family AT5G60850 51.0 7.2e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8615 PF02701 zf-Dof 4.50E-32 No_clan Cmetu TF