Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0911 ATGCCGTCTCACGCGGATCTGGACCATCAGATCGAGCATCTGATGGAGTGCAAGCCGTTACCGGAAGCGGAGGTGAAAATACTTTGCGATCAGGCGAGAGCGATTCTTGTCGAGGAGTGGAACGTGCAACCGGTTAAGTGTCCGGTGACGGTTTGTGGTGATATTCATGGCCAATTTTACGATCTCATTGAACTGTTTCGGATAGGAGGCCGTACTCCCGATACTAATTACCTTTTCATGGGCGATTACGTCGATCGTGGGTACTACTCGGTCGAGACAGTTACTCTTCTAGTGGCTCTAAAAGTTCGTTACAGAGACAGAATTACCATCTTGAGGGGTAATCATGAGAGCCGACAAATAACTCAAAAAATATGGAAATGCCAATGTCTGGAAACACTTCACCGATCTTTTGATTACCTCCCTCTTACAGCTCTAGTTGAGAGTCAGGTTTTCTGTTTACATGGAGGACTTTCTCCATCTTTGGATACCTTGGATAACATTCGCTCATTGGACCGTATACAAGAGGTCCCCCATGAGGGGCCGATGTGTGATCTCTTATGGTCTGATCCAGACGACCGGTGTGGATGGGGAATATCTCCACGTGGGGCTGGGTATACATTTGGTCAGGATATAGCTGCTCAGTTCAATCATACAAATGGGCTCTCTCTTATATCCAGAGCACATCAACTTGTCATGGAAGGATACAACTGGTGTCAGGATAAGAATGTGGTGACTGTCTTTAGTGCACCAAATTATTGTTATCGGTGTGGAAATATGGCTGCAATTCTGGAAATTGGGGAGAATATGGATCAAAATTTTCTACAATTTGACCCAGCTCCTCGGCAAATTGAACCTGATACCACACGGAAGACTCCTGATTATTTTTTGTGA 891 45.45 MPSHADLDHQIEHLMECKPLPEAEVKILCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGRTPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQKIWKCQCLETLHRSFDYLPLTALVESQVFCLHGGLSPSLDTLDNIRSLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18981016 18983452 - PI0028851.1 Cmetu10g0911 367774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0911 296 SMART pp2a_7 20 280 IPR006186 GO:0016787
Cmetu10g0911 296 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Cmetu10g0911 296 Gene3D - 2 296 IPR029052 -
Cmetu10g0911 296 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Cmetu10g0911 296 PRINTS Serine/threonine phosphatase family signature 242 258 IPR006186 GO:0016787
Cmetu10g0911 296 PRINTS Serine/threonine phosphatase family signature 164 191 IPR006186 GO:0016787
Cmetu10g0911 296 PRINTS Serine/threonine phosphatase family signature 220 240 IPR006186 GO:0016787
Cmetu10g0911 296 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Cmetu10g0911 296 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Cmetu10g0911 296 Pfam Calcineurin-like phosphoesterase 48 229 IPR004843 GO:0016787
Cmetu10g0911 296 CDD MPP_PP2A_PP4_PP6 6 280 - -
Cmetu10g0911 296 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 5 296 IPR047129 GO:0004722
Cmetu10g0911 296 SUPERFAMILY Metallo-dependent phosphatases 6 283 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0911 K04382 - - csv:101207312 583.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1620 Cmetu-Chr5:22641136 Cmetu10g0911 Cmetu-Chr10:18981016 1.10E-135 dispersed
Cmetu08g1151 Cmetu-Chr8:11119447 Cmetu10g0911 Cmetu-Chr10:18981016 1.20E-134 dispersed
Cmetu10g0911 Cmetu-Chr10:18981016 Cmetu10g1344 Cmetu-Chr10:17024492 3.70E-90 dispersed
Cmetu10g0911 Cmetu-Chr10:18981016 Cmetu03g0691 Cmetu-Chr3:6658444 6.70E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g809 Blo01g00410 Blo16g01139 Bda01g02171 Bda11g01245 Bpe13g00474 . . . Cmo04g01688 . . . . . Sed08g1883 . Cpe01g01424 Bhi07g01649 Tan04g1154 Cmetu10g0911 Lac13g0253 Hepe10g1691 . . Cla05g02498 Cam05g2682 Cec05g2715 Cco05g2750 Clacu05g2685 Cmu05g2539 Cre05g2654 . Cone19ag0992 Cone8ag0631 Cone12ag0613 Lsi04g00498 Csa05g02387 Chy10g00950 Cme10g00475 . . . Bda11g01245 . . Bma01g00073 . . . . Cma04g01610 . Car04g01652 . . Cpe07g00610 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000292 4 4 4 4 5 4 7 4 4 4 4 4 7 4 4 6 4 11 7 4 3 4 4 4 4 4 4 11 3 5 145