Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0943 ATGGCTGAGTTGACTCAGCCGGAGGTCTACTCGCCCGGGACTCTCCACGTCTGGAAGACCCTCTTGAACTGGTTGGCTTTCTTCTTCCAGATCTTCGTTTCCATCCTCACAGCTTTTTCACACCTTCGTCTTCTTTCTTCTCATTCTTCTTCTGATTCTTCTTCCTCTCCCTCTTTTAAACCTTTGCCACTCGTTGAACTTCCCGACAATGAGTTGCTTGCTGCCTCTGCTCTTGATATTACTTCTGTTGAAGATGAGGAGGAGTCTGATGGGCTTATTGAGAAACTGACGATAGTTCTCGACTTGGATGAAACACTCATATGTGCATATGAAACATCTACTTTGCCTGCTATTATTCGCAGTCAAGCAATAGAAGCTGGATTGAAATCTTTTGAACTCGAGTGCTATTCTTCAGACAAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTGACTGTCTTCGAGCGCCCTGGTCTGCACGATTTCTTAAAACATCTAGGTGGATTTGCAGATCTTGTACTCTTCACAGCTGGTCTCGAAGGGTATGCAAGACCTCTTGTCGACAGGATAGATGAAGAAAATCGATTTAGTCTTAGACTGTATAGGCCTTCAACGATTAGCACGGAATACCGAGATCACGTGAAGGATCTCTCCTGCCTATCAAAGGATCTAAGAAGAATAGTCATCGTTGACAACAATCCTTTCAGTTTTTTACTCCAACCTCTAAATGGAATTCCTTGCATTCCATTTTCTGCAGGGCAACCACACGATTCACAGCTCCTAGATGTCATTCTTCCACTTCTAAAGCACCTTTCGCTGCAGAACGACGTCAGGTCAGTGCTGTACGAAAGATTCCATATGCCTGAATGGTTTCAGAAGCATGGAATTCCAACCTACGTTAAATAA 906 44.15 MAELTQPEVYSPGTLHVWKTLLNWLAFFFQIFVSILTAFSHLRLLSSHSSSDSSSSPSFKPLPLVELPDNELLAASALDITSVEDEEESDGLIEKLTIVLDLDETLICAYETSTLPAIIRSQAIEAGLKSFELECYSSDKDCEGKPKVNYVTVFERPGLHDFLKHLGGFADLVLFTAGLEGYARPLVDRIDEENRFSLRLYRPSTISTEYRDHVKDLSCLSKDLRRIVIVDNNPFSFLLQPLNGIPCIPFSAGQPHDSQLLDVILPLLKHLSLQNDVRSVLYERFHMPEWFQKHGIPTYVK 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14701972 14705599 + PI0009832.1 Cmetu10g0943 367806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0943 301 Gene3D - 85 285 IPR023214 -
Cmetu10g0943 301 CDD HAD_FCP1-like 95 247 - -
Cmetu10g0943 301 NCBIfam dullard-like phosphatase domain 95 281 IPR011948 GO:0016791
Cmetu10g0943 301 SUPERFAMILY HAD-like 95 282 IPR036412 -
Cmetu10g0943 301 ProSiteProfiles FCP1 homology domain profile. 91 271 IPR004274 -
Cmetu10g0943 301 SMART forpap2 94 257 IPR004274 -
Cmetu10g0943 301 FunFam CTD small phosphatase-like protein 2 84 284 - -
Cmetu10g0943 301 PANTHER DULLARD PROTEIN PHOSPHATASE 70 280 - -
Cmetu10g0943 301 Pfam NLI interacting factor-like phosphatase 96 278 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0943 K15731 - - csv:101212176 552.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2861 Cmetu-Chr4:1515962 Cmetu10g0943 Cmetu-Chr10:14701972 1.20E-18 transposed
Cmetu10g0943 Cmetu-Chr10:14701972 Cmetu08g0250 Cmetu-Chr8:22895188 2.10E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g671 . . . . . Bpe10g00844 Bma14g01802 Bma15g00179 . . . . . . Sed07g2568 . . Bhi07g01744 Tan04g0166 Cmetu10g0943 Lac13g0190 Hepe10g0024 . . Cla05g02552 Cam05g2740 Cec05g2772 Cco05g2812 Clacu05g2741 . . . . . . Lsi04g00560 Csa05g02326 Chy10g00893 Cme10g00536 Blo06g00883 . Bda07g01611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002098 2 2 3 2 3 1 3 1 1 2 2 2 3 2 2 2 1 4 3 2 2 2 2 1 1 2 2 6 2 2 65