Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g0984 ATGCAAGCTGACACTCTAACAATACATAAGCTTGCTGTTCTTCATTCAGTGAGACCTTTCATTAGAAGTTCTTTCCCGCACTCAAAGCTTTTCTCTACTTTCGCTTCCATTCCCAAAGCTTCCCGCCAACCAGGTTCCTTCCGGTTGCCTCAGAATTCTTCCTTCAAGGGTGTGCGGTATGACAGTCCAGTAATGGGTGCAACGGAATTTTCTGATCTTGAAGATGTGGATTTGTTGGTGGAGATGTGCATTACGCATACATTGCCACCGGCTCTAACGCTTAAGCAGGGGCTGGAGAGTATAAGTGAGGCTATTGAAAGGTTTAAATTAGAATCTCCACGTTCTTCCCAGGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTACAAAAGCTCTTTTGTGGTTCTGTTGTCAACCAGAGTCGTCTGAAGTTTATCCTATATTTTTCCTTTCTAATGAGAAGGACCCGACGATTAAGTCATTGTACTTGAATGATACCCGCGGCGTTTTTGGAATTGGTACTGCAATTTACTTTGCAAGCTTGTCTTCTACTTCATCAAAACAAAGTACATTGAAAAGGTATCTCATGAATGGTTCAGCTCCTATTATGGCTTATGGTTTTGTTAATGCTAATACCGGGGAGACATCTTCACTAAAGAACGAGGCTGGTCATTCATACTTTTGCGTTCCCCAAATTGAGTTGAGTGAGTACGAGGGCATTTCTGTTCTCTCTGCAACACTTGCATGGAGTGAATCTTTCCCTTGTACATTTGAGGAAGCTCTCCATTCTTTGGGCTCATGTATCTACCAGATCAGTACTAATTTTCCATCTAGTGAAAACTGCCAGTACAGATATATTAGATCTTCATTAACTGCTTCAAAACTTGTGGACGGAACAAATCAGATGGCCTACATGAAAGTGCTTTCTGTAGCTGGTGAAAGTTTCAGGACTGGCATCATGGAAATGGAGTCTGCACTCTTCCATCAGTTCTGCATTAGGGTTTCACCAAGTGTTGCCGTTGCATGTAATATGTTGGATCATATCAATGAAACTGGCCACTCAGAGCAAGAGCATGCCAACATTAATGCTCTCTGGGCATCGCTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCCATCGCTGCTGCAAGTCATCCCCTGATAACATGTATTGCATGCTTTGATGAACGCTCTCTTGCTTTTCATGCGATTGGGTATGCCAAAGGATCTCATAGCCCGGCAGTAGTAATCACATCGTCTGGCACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCTAGTCAAGACTTTCTTCCTCTTTTATTGCTCACAGCTGACCGTCCCTCGGAGCTACAGGACGCAGGAGCAAATCAAGCTATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAACTGATCAAATTCCCGCCAGAATGGTACTTACCACTCTTGATTCTGCTGTACATTGGGCAACTTCTTCACCCTATGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGGGTTGCTTAAATGGATTACACATTTGGTTATCAAGCACTGAAGTTTTTACCAAATATATTCGACTTGAAGCATCTCCAACGTCTATTGATACTTTTGGTAATATGGCAGAGGTTTTGAAAGTAATCCATGGAGCCAGAAACGGAATTCTAGTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAACATATTTCATGGCCTATAGTGGCTGATGTATTGTCTGGTTTACGATTAAGAAAGAGTTTGTCTTCCTTCCTAGAAATGGAAAATAACTTTTTCTTTATTGATCACCTTGATCATGCTTTGCTTTCAGATTCGGTGAGAAAATGGCTAAAATTTGATGTGATCATTCAGATTGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGTTGCTTGAGGACTGCAGTCCCTGTTCATACATCATGGTTGATAAGCATCCAGGTCGTCATGATCCATCACATATTGTAACCCATAGAATTCAAAGCACCGTCTTAGAATTTGTTGGTTGTTTACTTAAAGCTGGTTTTCCTCTCAATAGGAGCAAGTGGACTGGTACTTTACGAGCATTGAATATGATGGTTGAGTGGGAAATTCAATTTCAAATTTCTGCTAACTACTCTCTATCTGAGCCCGAAGTTGCTCAGGTAATCTCAGAAGCACTTTCATTTGATTCCGTTCTGTTCCTGGGGAACAGCATGCCAATCCGCGATGTAGATATGTATGCATATGGTTGGTCAAAATGCAACGACAGTGTAGCGGCTATACCATTAAACTTACAAATGCCATTTTACTGGACATGGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTTCTTAGCACAGCAGTTGGTTTTTCTGTTGGATGCAACAAACGAGTGCTTTGTGTAGTTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTAGCAATTCTGAACCAGAGGATGACGAGGAAACCTGTGACTGTCGTTGTAATCAATAATAGTGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGATGCAGCAATACTAGACCAATTCTTCCACACCTCTCACCAGGTTTCACTTCGGAACCTATGTGTGGCACATGGCCTGAAGCATTTACATGTACGGACAAAGATGGAACTTCAAGATGCTTTATTTATGTCTCATCATGAAGAAAGTGACTGCATAATCGAGGTCGAAAGTTCCATTGATGCCAATACTACCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGATCATGGTTTACGCATCTTTTCAAGGCTTTATTCTGAAGAATCTGTTTCACCTGGACTCTTCCTTTGCAAGATAAGTAGAATGGAATGCACATTGTTCAGAATCCCGCTATGTGCTCCACCTACGACTTCATCTAGTTCTATTGATCAAGTCAGACAGAAGTTCTTCCGAGAAGGTTTTGTTTTGTCTTTGTTTCTGGAGGACGGGAGTCTTGGGCTTGGTGAGGTTTCACCCCTTGACATCCACAGAGAGAACCTACTAGATGTGGAAGAGCAACTTAAGTGTCTCATTCCTATATTAAAGGGAGCCAAGATCAGCAGCTCCATTCCTCTGCTACGGGGCTCATTTTCGTCTTGGATTTTCCATGAACTGGGAATACCACCAAGTTCAATCTATCCAAGTGTTAGATGTGGTTTGGAAATGGCTGTTCTCCATGCCATAGCAGGGAGAAAAGGTTGCAGCTTCTTAGATGTACTCCAGCATCAGTTAGATGAAGAAAAGAACTTGACAACTTCGTCAAAAGTTCAAATTTGTGGGCTTTTGGATTCCGGTGGAACTCCATCTGAGATTGCTTATGTTGCTAAGACACTGGTTGAAGAAGGATTTCCTGCTATCAAGTTAAAGGTAGCCCGACAACGGAATGTCATGTATGATGCTGCTGTTGTACAGGAAGTAAGGAAGAAGCTTGGCAACCAAATTGAACTCCGTGTTGATGCCAATAGGAACTGGAGCTATGAAGAAGCTCTTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTACAATATATTGAGGAACCAGTTAGGGATGAAGATGCTATTATTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCGCTGGATGAAACTATCGATCGTATTCAAGATAATCCTGTGAAAGAACTTGCCAAGTATGCCCATCCAGGAATTGTTGCTATAGTTATAAAACCAAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCGAGGTGGGCACAGCAACATGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCCGGATATATACACTTATCCTGTTATCTGGAGCTTCAGAATGCAGAAGTAAGAAAACTCATAAATATTCAACCAGCCCCATCTATAGCCCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTGTCAATCCTCTCAGAATTCGCCGTGACCCTCATAGTGGCATTATTGAAGCATCTGTTGCTGAGGCTAATCAACTTCTAAAAAGTTTTCAAATCAACCAGAAGTTTGTTCGTAGAAAATTTACTGACGGGCAAGTTCGCAGCTACAGATTAAGTGTAGACTCGAAGGGGTTCTCTTATTCAATTAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAACGTGCTCTTCTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGCTTACAATCATGAAAGGCGTATCAGGTTCAGCCAGATGCATTTCTCTTGACCTTCCTGGTCACGGGGAATCAACCACAGAAAAGAATGATTGTGATGTTCATGGTGTGGAGGAACCAAGTTTTTCAATGGAGGTTGTTGCTGATCTACTGTATAAGTTGATTCAACATCTTGCTCCTGGTAAAGTTACAGTTAACCTTGTAGGGTATTCAATGGGGGCTAGGATTGCCATGTACATGGCCCTGAGATTTGGTGATAAGATTCGAAGAGCTGTTATAATATCTGGAAGCCCTGGTTTAAAAGACAAGGTGGCAAGAAAAATCCGTAGAGTTAATGATGATTCTAGAGCACGAATCCTTAAGCTCTATGGCTTACAAAACTTTCTGGAAGCGTGGTATGGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATTGAAGCATGATGATGTGCAGCATCTTGCAAAAGCTCTATCTGAATTAAGCATTGGAAGGCAGCCGTAA 4890 42.09 MQADTLTIHKLAVLHSVRPFIRSSFPHSKLFSTFASIPKASRQPGSFRLPQNSSFKGVRYDSPVMGATEFSDLEDVDLLVEMCITHTLPPALTLKQGLESISEAIERFKLESPRSSQGVFRFQVAVPPSTKALLWFCCQPESSEVYPIFFLSNEKDPTIKSLYLNDTRGVFGIGTAIYFASLSSTSSKQSTLKRYLMNGSAPIMAYGFVNANTGETSSLKNEAGHSYFCVPQIELSEYEGISVLSATLAWSESFPCTFEEALHSLGSCIYQISTNFPSSENCQYRYIRSSLTASKLVDGTNQMAYMKVLSVAGESFRTGIMEMESALFHQFCIRVSPSVAVACNMLDHINETGHSEQEHANINALWASLIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPLITCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPSELQDAGANQAINQVNHFGSFVRFFFSLPAPTDQIPARMVLTTLDSAVHWATSSPYGPVHINCPFREPLENSPSPWNLGCLNGLHIWLSSTEVFTKYIRLEASPTSIDTFGNMAEVLKVIHGARNGILVLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEMENNFFFIDHLDHALLSDSVRKWLKFDVIIQIGSRVTSKRVSKLLEDCSPCSYIMVDKHPGRHDPSHIVTHRIQSTVLEFVGCLLKAGFPLNRSKWTGTLRALNMMVEWEIQFQISANYSLSEPEVAQVISEALSFDSVLFLGNSMPIRDVDMYAYGWSKCNDSVAAIPLNLQMPFYWTWTSGNRGASGIDGLLSTAVGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRMTRKPVTVVVINNSGGAIFSLLPIKDKVDAAILDQFFHTSHQVSLRNLCVAHGLKHLHVRTKMELQDALFMSHHEESDCIIEVESSIDANTTFHSVLRKFTCQAVDHGLRIFSRLYSEESVSPGLFLCKISRMECTLFRIPLCAPPTTSSSSIDQVRQKFFREGFVLSLFLEDGSLGLGEVSPLDIHRENLLDVEEQLKCLIPILKGAKISSSIPLLRGSFSSWIFHELGIPPSSIYPSVRCGLEMAVLHAIAGRKGCSFLDVLQHQLDEEKNLTTSSKVQICGLLDSGGTPSEIAYVAKTLVEEGFPAIKLKVARQRNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEALLFSSLVKDCGLQYIEEPVRDEDAIIKFCEESGLPVALDETIDRIQDNPVKELAKYAHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLELQNAEVRKLINIQPAPSIAHGLGTYRWLEEDVTVNPLRIRRDPHSGIIEASVAEANQLLKSFQINQKFVRRKFTDGQVRSYRLSVDSKGFSYSIKVLEVGQRTNDNVLFFLHGFLGTGEDWLTIMKGVSGSARCISLDLPGHGESTTEKNDCDVHGVEEPSFSMEVVADLLYKLIQHLAPGKVTVNLVGYSMGARIAMYMALRFGDKIRRAVIISGSPGLKDKVARKIRRVNDDSRARILKLYGLQNFLEAWYGGELWKSLREHPHYSQIIASRLKHDDVQHLAKALSELSIGRQP 1629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19892503 19908543 - PI0007536.1 Cmetu10g0984 367847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g0984 1629 SMART MR_MLE_2 1158 1254 IPR013342 -
Cmetu10g0984 1629 SFLD Enolase 1027 1373 - -
Cmetu10g0984 1629 Gene3D - 358 554 - -
Cmetu10g0984 1629 Pfam alpha/beta hydrolase fold 1439 1553 IPR000073 -
Cmetu10g0984 1629 NCBIfam o-succinylbenzoate synthase 1027 1339 - -
Cmetu10g0984 1629 CDD TPP_PYR_MenD 368 529 - -
Cmetu10g0984 1629 Pfam Middle domain of thiamine pyrophosphate 548 778 IPR032264 -
Cmetu10g0984 1629 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 368 536 IPR012001 GO:0030976
Cmetu10g0984 1629 Gene3D - 756 966 - -
Cmetu10g0984 1629 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 360 967 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cmetu10g0984 1629 Gene3D - 1134 1378 IPR036849 -
Cmetu10g0984 1629 SUPERFAMILY alpha/beta-Hydrolases 1427 1617 IPR029058 -
Cmetu10g0984 1629 SUPERFAMILY Enolase N-terminal domain-like 995 1128 IPR029017 -
Cmetu10g0984 1629 SUPERFAMILY Enolase C-terminal domain-like 1154 1374 IPR036849 -
Cmetu10g0984 1629 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 756 949 IPR029061 -
Cmetu10g0984 1629 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 822 935 IPR011766 GO:0003824|GO:0030976
Cmetu10g0984 1629 Pfam Enolase C-terminal domain-like 1165 1348 IPR029065 -
Cmetu10g0984 1629 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 102 1629 - -
Cmetu10g0984 1629 CDD TPP_SHCHC_synthase 757 952 - -
Cmetu10g0984 1629 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 359 539 IPR029061 -
Cmetu10g0984 1629 SUPERFAMILY DHS-like NAD/FAD-binding domain 522 739 IPR029035 -
Cmetu10g0984 1629 NCBIfam 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 366 837 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cmetu10g0984 1629 Gene3D - 573 749 - -
Cmetu10g0984 1629 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1206 1237 IPR018110 GO:0009063
Cmetu10g0984 1629 Gene3D alpha/beta hydrolase 1431 1629 IPR029058 -
Cmetu10g0984 1629 SFLD o-succinylbenzoate synthase 1027 1373 - -
Cmetu10g0984 1629 Gene3D - 995 1133 IPR029017 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g0984 K14759 - - csv:101217012 3076.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1018 . . . . . . . . Cmo04g01637 . . . . . Sed06g1824 . . Bhi07g01422 Tan04g0939 Cmetu10g0984 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37