Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1060 ATGGGCCAATTAGGCAGATTCGAGTTGAGACCGAGAGGAATGGAACTACAATGCGCCGGCAAGGGACGTGGGACTCGTTGCACCGGTCCGGCCACCCGACGCTGTGGTCGCTGTGGAGTTGTTTCTTACTGTTCAGTCGATCACCAGGTTAAACATTGGAATGATCATAAAGATGAATGCAAAAGGTTTGAACTACAAATGGAGAGAATTGATGCCTTGAATGAGTTCCCTTTCACATTTTCTGAGGAGGCTACTGTTCAGTTGTGTCAAAAACAGGAGAGTAGATGCTCATTCTTGACCAGAAGGGCAATCCACAAAATTGGAATGTGGTTTTACGAATGTCCGTGTGGGGAAGCTGCTACATCTTATAAGTTCTCAAGATTAAATGATGGTTGGGTTCTACCTAGATTCCTTTGTCCATGTAGTGAACCGCTTTCACCAATAACAAAACGCTTACACAGTTGGAAGGACTATTATGATTGGAGATGCATCCCCCTTCACTCTCCTGCTGCTTTGCTTCTTCATTGGCCACTTACAATAAGTTATGCTGTGCAAGTTGCTGGTTTGGAGCCCTTGACTCCAGAATTTGGCGACACATTATGCATACATTATCTAGGGCCTGAGAAGGAGCTTCTACAGCTCTCTGTTTTTGCTGAGCTACTTGCACTTTTCCCTGGGAATGGTAAGACCATTCACCTTTGCAGTTTTGCTAAGTGCCTTCAGATGGATTGTGTTTGCAAATCTTCATGCAAAGATGTTGACAGGAATGTATATTCTAATAAATATCCACAGTTAGCGTTGAAGCTTCGAACAGGGTTTTACCATGATTGTTACAAAAACATTACCAAAGATTGTTATCCTCACTTAATCATTGCTCCAAATGCTGGGATCGCTGCTTATTCCAGTTGGCTTCCTACCATTGAATTCATCAAGGAAATAAAAGTCCCAGCAATCTTTTCTGATTTCTGTGAAGAAGCTTGCCATCTCGGAGCTTCTTGTTTGAGCAGTGTGATAGGCCGCCCCATTACTTTCCCGGTATCAAAAATTTCATTATACAATCTAAAATTTTGCAAATTTTGCTGTAAATGTTTATAA 1095 42.19 MGQLGRFELRPRGMELQCAGKGRGTRCTGPATRRCGRCGVVSYCSVDHQVKHWNDHKDECKRFELQMERIDALNEFPFTFSEEATVQLCQKQESRCSFLTRRAIHKIGMWFYECPCGEAATSYKFSRLNDGWVLPRFLCPCSEPLSPITKRLHSWKDYYDWRCIPLHSPAALLLHWPLTISYAVQVAGLEPLTPEFGDTLCIHYLGPEKELLQLSVFAELLALFPGNGKTIHLCSFAKCLQMDCVCKSSCKDVDRNVYSNKYPQLALKLRTGFYHDCYKNITKDCYPHLIIAPNAGIAAYSSWLPTIEFIKEIKVPAIFSDFCEEACHLGASCLSSVIGRPITFPVSKISLYNLKFCKFCCKCL 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18889427 18893967 - PI0020624.1 Cmetu10g1060 367923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1060 364 Pfam MSS51 C-terminal domain 177 337 IPR046824 -
Cmetu10g1060 364 ProSiteProfiles Zinc finger MYND-type profile. 18 60 IPR002893 -
Cmetu10g1060 364 PANTHER ZINC ION BINDING PROTEIN 16 346 - -
Cmetu10g1060 364 SUPERFAMILY HIT/MYND zinc finger-like 26 63 - -
Cmetu10g1060 364 Gene3D - 10 65 - -
Cmetu10g1060 364 Pfam MYND finger 26 60 IPR002893 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1060 K24081 - - csv:101208441 679.478
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g793 . . . . . . . . . . . . . . Sed04g0658 . . Bhi07g01669 Tan04g1170 Cmetu10g1060 Lac13g0240 Hepe10g1679 . . . . . . . . . . . . Cone12ag0622 . Csa05g02374 Chy10g00939 Cme10g00487 . . Bda07g01572 . Bpe11g01740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014289 1 1 1 0 1 0 2 0 1 1 0 0 0 1 1 1 0 1 1 0 1 1 1 0 1 0 1 2 1 1 22