Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1064 ATGTCAAATTCTGATCATACTAATGGCGTCTCCAATGGCGCCACCATCGACACCCACAAGAATCAGTCCTCTTCCAATGGAGCCCTCGTTGTTAAAAAGCCTCCTTCTAAGGATCGTCATAGTAAGGTTGATGGTCGTGGCCGTCGTATCCGTATGCCCATCATCTGCGCTGCTCGAGTCTTCCAGCTGACTCGTGAGCTTGGTCATAAGTCCGACGGTCAAACCATCGAGTGGCTTCTTCGCCAAGCTGAGCCTTCTATTATTGCTGCTACTGGCACTGGTACTACTCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACTACTTCTACTCTTTCCCTCTCTCGTCCTCAAGCTCTTTCCGGTCCCACGCCGTTTATTCTCGGCAAGCGTGTTAGGTCCGACGATGATGGTAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATTGTGGGTCCGACGGGGCCAGGTGGGTATTGGGCGATTCCGGCTAGACCGGATTATGGGCAGGTTTGGAGTTTTGCTGCCGCGGCTCCGTCGGAGATGGTAGTTCAACCAGGGGGGATTTCTCAACAAGCTTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCCAGAGTAGGGAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGAGGTGGTTCTGGACGGCGGGAAGATGACCCTCGCTAA 771 53.31 MSNSDHTNGVSNGATIDTHKNQSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16894183 16895753 + PI0026750.1 Cmetu10g1064 367927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1064 256 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 125 IPR005333 GO:0003700
Cmetu10g1064 256 MobiDBLite consensus disorder prediction 1 47 - -
Cmetu10g1064 256 MobiDBLite consensus disorder prediction 33 47 - -
Cmetu10g1064 256 MobiDBLite consensus disorder prediction 109 133 - -
Cmetu10g1064 256 ProSiteProfiles TCP domain profile. 36 90 IPR017887 -
Cmetu10g1064 256 Pfam TCP family transcription factor 36 116 IPR017887 -
Cmetu10g1064 256 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1064 K16221 - - csv:101206050 422.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1064 Cmetu-Chr10:16894183 Cmetu10g1669 Cmetu-Chr10:19329286 1.60E-28 dispersed
Cmetu10g1064 Cmetu-Chr10:16894183 Cmetu09g1538 Cmetu-Chr9:9893539 1.00E-80 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1538 . 43 260 TCP Transcription Factor Family AT5G23280 62.2 1.7e-64 243.0
Cmetu10g1064 . 34 256 TCP Transcription Factor Family AT5G23280 59.6 7.6e-60 227.6
Cmetu11g0225 . 56 314 TCP Transcription Factor Family AT2G45680 53.4 5.2e-62 235.3
Cmetu10g1669 . 69 163 TCP Transcription Factor Family AT3G47620 89.7 9.0e-41 165.2
Cmetu12g0790 . 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.3e-39 161.4
Cmetu10g0777 . 35 154 TCP Transcription Factor Family AT3G47620 65.9 1.0e-36 151.8
Cmetu10g0777 . 35 136 TCP Transcription Factor Family AT1G69690 77.9 6.9e-37 151.8
Cmetu06g1199 . 43 296 TCP Transcription Factor Family AT3G27010 54.6 3.6e-59 225.7
Cmetu10g1064 . 4 254 TCP Transcription Factor Family AT5G08330 55.7 1.3e-64 243.4
Cmetu09g1538 . 30 259 TCP Transcription Factor Family AT5G08330 60.6 2.9e-64 242.3
Cmetu10g0777 . 34 268 TCP Transcription Factor Family AT1G35560 50.2 8.8e-43 171.4
Cmetu02g1260 . 40 139 TCP Transcription Factor Family AT5G60970 76.2 2.1e-39 160.2
Cmetu07g0568 . 38 131 TCP Transcription Factor Family AT3G02150 77.1 9.8e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8633 PF03634 TCP 1.60E-32 No_clan Cmetu TF