Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1080 ATGCTACGAAGACGACTGTGTTACTTATTATCTAGTTCACTTGCCTCTGTTCATACTAAACCCCCACCTGCTATTGTAACAAACCAAGCATTTTCGCGTCCATTCTTAGAGTTCCAGCAAAACCCTTGCCTTGATCGGTGTGTAGGTTCCCCTCTTTCTGGAAATATCTTTGGTTTTCGAGCTTTCAGCCTTTTGAGTTTAAATGATCTGAGAGACAAAGTTCCAAGGAAACAGAAGACAAGAAAGGGTCGTGGTATTGGTTCTGGGAAGGGGAAGACGGCTGGAAGAGGTCACAAGGGCCAAAGAGCAAGAGGTTCTGGGAAGCTCGGGTTTGAAGGTGGTCAAACCCCACTGCGCCGCAGGCTTCCTAAAAGAGGGTTTAAAAATCCTTTCAGCCTCACGTTTCAGCCAGTTGGTTTGGGAAAGATTGCTAAACTTATAAATGCTGGGAAAATTGATTCTTCTGAATTAATAACTATGAAAACTCTCAAGGATACAGGTGCAATTGGAAAACAAATAGAGGATGGGGTAAGATTGATGGGACGTGGTGCCGAACAAATCAAGTGGCCAATTCACCTAGAGGTGTCGAGGGTCACTGTTCGAGCGAAGGAAGCTGTCGAAGCTGCAGGTGGGACTGTTCGAAGAGTATATTACAACAAATTAGGCTTTCGAGCCCTTCTCAAGCCCGAGTGGTTTGAAAAGAAAGGGAGACTCCTACCACGTCCGGCAAGGCCACCACCAAAGCAGCGAGACAAAGTCGACAGCATTGGCCGCTTGCCTGCTCCGACTAAACCTATTCCTTTTTCAGTTGAATATGAAGATGGAGGAAAGGCAGCGTCCAATTTGTCTACCTGA 855 46.2 MLRRRLCYLLSSSLASVHTKPPPAIVTNQAFSRPFLEFQQNPCLDRCVGSPLSGNIFGFRAFSLLSLNDLRDKVPRKQKTRKGRGIGSGKGKTAGRGHKGQRARGSGKLGFEGGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIEDGVRLMGRGAEQIKWPIHLEVSRVTVRAKEAVEAAGGTVRRVYYNKLGFRALLKPEWFEKKGRLLPRPARPPPKQRDKVDSIGRLPAPTKPIPFSVEYEDGGKAASNLST 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4889401 4895134 + PI0028334.1 Cmetu10g1080 367943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1080 284 NCBIfam 50S ribosomal protein L15 67 213 IPR005749 GO:0003735|GO:0006412|GO:0015934
Cmetu10g1080 284 MobiDBLite consensus disorder prediction 74 123 - -
Cmetu10g1080 284 SUPERFAMILY Ribosomal proteins L15p and L18e 75 213 IPR036227 -
Cmetu10g1080 284 PANTHER 50S RIBOSOMAL PROTEIN L15 39 272 IPR005749 GO:0003735|GO:0006412|GO:0015934
Cmetu10g1080 284 FunFam 50S ribosomal protein L15 131 216 - -
Cmetu10g1080 284 MobiDBLite consensus disorder prediction 237 284 - -
Cmetu10g1080 284 Hamap 50S ribosomal protein L15 [rplO]. 67 216 IPR030878 GO:0003735|GO:0006412|GO:0015934
Cmetu10g1080 284 Gene3D - 131 216 - -
Cmetu10g1080 284 MobiDBLite consensus disorder prediction 237 257 - -
Cmetu10g1080 284 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 90 213 IPR021131 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1080 K02876 - - csv:101207666 497.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1080 Cmetu-Chr10:4889401 Cmetu10g1596 Cmetu-Chr10:20444502 4.90E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g314 . . . . . . Bma14g01904 . Cmo04g01573 Cmo18g01025 . Cma18g01015 Car04g01555 Car18g00938 Sed06g1895 Cpe09g00307 Cpe01g01339 Bhi07g01318 Tan04g0845 Cmetu10g1080 Lac13g0504 Hepe01g1185 . . Cla05g02293 Cam05g2466 Cec05g2487 Cco05g2530 Clacu05g2461 Cmu05g2322 Cre05g2440 . . Cone6ag0446 . Lsi04g00248 Csa05g02619 Chy10g01154 Cme10g00252 . . Bda07g01718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005339 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 2 1 8 0 38