Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1095 ATGAGTAACTCCGAAGACAAATCTTCCATGGCCGATTTGGTTCAACCTTCTGAGCATTTCTGTTATGTCAAATGCAACTTCTGTAACACTGTTCTTGCGGTTGGGATTCCATGCAGACATTGGTTGGATACCGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCTTTTTTGAGCACAAGACCTCCTTTACAAGGCCAATGCATTGATCATCCTCTAACTTTTCAGTCTCAGGTTGGATTCTCCAATAATGATCATATTCGAAAGGGTGCTTCCACATCTTCCACTTCCACTGCCTCTTCAATCACAAATGATTCTCCAAATTTTGTTGTCAAACCCCCTGAGAAGAAACATAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAAATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTTAGTGCAGCAGCAAAAAACTGGGCAAGGTACATTCCTAATTCAGCTTCTGGGTCGGTTTCTGGGACTCACAACAACAATGAATGA 528 41.86 MSNSEDKSSMADLVQPSEHFCYVKCNFCNTVLAVGIPCRHWLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLTFQSQVGFSNNDHIRKGASTSSTSTASSITNDSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSASGSVSGTHNNNE 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19750794 19752973 + PI0000741.1 Cmetu10g1095 367958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1095 175 CDD HMG-box_SF 119 155 - -
Cmetu10g1095 175 PANTHER PROTEIN YABBY 6-RELATED 10 170 IPR006780 GO:0007275
Cmetu10g1095 175 SUPERFAMILY HMG-box 102 156 IPR036910 -
Cmetu10g1095 175 FunFam protein CRABS CLAW isoform X3 110 170 - -
Cmetu10g1095 175 MobiDBLite consensus disorder prediction 86 108 - -
Cmetu10g1095 175 MobiDBLite consensus disorder prediction 86 117 - -
Cmetu10g1095 175 Gene3D High mobility group box domain 107 160 IPR036910 -
Cmetu10g1095 175 Pfam YABBY protein 16 158 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1095 K25796 - - csv:101219863 360.147
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1095 Cmetu-Chr10:19750794 Cmetu05g1829 Cmetu-Chr5:1310328 2.60E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1095 . 3 172 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 1.5e-44 176.4
Cmetu09g0297 . 88 248 C2C2-YABBY Transcription Factor Family AT2G45190 59.2 6.2e-42 167.5
Cmetu05g1548 . 1 142 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 3.3e-44 175.3
Cmetu02g0863 . 6 170 C2C2-YABBY Transcription Factor Family AT1G08465 55.9 1.3e-43 173.3
Cmetu09g0297 . 44 238 C2C2-YABBY Transcription Factor Family AT1G08465 52.3 1.6e-43 172.9
Cmetu06g2212 . 21 185 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 1.6e-38 156.4
Cmetu09g0297 . 55 247 C2C2-YABBY Transcription Factor Family AT4G00180 55.7 1.0e-49 193.7
Cmetu10g0308 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 55.7 4.4e-42 168.7
Cmetu02g0863 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 68.0 2.5e-59 225.3
Cmetu05g1829 . 8 159 C2C2-YABBY Transcription Factor Family AT2G26580 72.3 4.2e-59 224.6
Cmetu09g0297 . 46 209 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 1.7e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8635 PF04690 YABBY 7.80E-54 CL0114 Cmetu TF