Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1171 ATGGGAGCTGCCAATCTCCCGTGTTTTTCATCGCTATATCGAGTTTTTCCACTTCAAAACAATGCTCCCAACAAATTTTTACCATTTTCTTCAATTCTTTCAAAACCCCTTTACCGATTGAACAGGATTTGCTGCGGAGTACCCGAGAGTGGAATTCAGCAAAACCCCTCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGAGTACAATTTAGCTATGAAGAAGATGATGAGGAACCCTTATGAGTATCACCATGAACTGGGTATGAACTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCTGAAGATATCAATTTCCTGAAAGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCGTCATATGAGGCAACCGGCAAAAGATTTCGATCCTGATTCCCTGAGAAATGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCAATTTCAAAGGGCGAAGGAAAAGTATATGTGCATTGCACTGCTGGACTTGGAAGAGCCCCGGCCGTTGCAATAGCCTACTTGTATTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACTTCTAAAAGACCTTGTGGACCAAGTAAAAGAGCAATCCGTGGAGCAACATATGATCTATCTAAAAATGATCCGTGGAAGGAGCCATTTGAGAGCCTTCCAGATAATGCATTCGAGGATATTGCAGATTGGGAAAGAAACTTGATTCGGGATCGGGTTCGTTCTCTCCGTAGAACTTGA 849 41.7 MGAANLPCFSSLYRVFPLQNNAPNKFLPFSSILSKPLYRLNRICCGVPESGIQQNPSTSRPSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKELGIRHMRQPAKDFDPDSLRNGLPKAVSLLEWAISKGEGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLIRDRVRSLRRT 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13437522 13444656 + PI0024497.3 Cmetu10g1171 368034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1171 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311|GO:0016791
Cmetu10g1171 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470|GO:0008138
Cmetu10g1171 282 Gene3D Protein tyrosine phosphatase superfamily 75 282 IPR029021 -
Cmetu10g1171 282 SMART dsp_5 92 246 IPR020422 GO:0006470|GO:0008138
Cmetu10g1171 282 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203
Cmetu10g1171 282 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 75 282 - -
Cmetu10g1171 282 Pfam Dual specificity phosphatase, catalytic domain 115 229 IPR000340 GO:0008138|GO:0016311
Cmetu10g1171 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 232 IPR029021 -
Cmetu10g1171 282 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 51 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1171 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0979 Cmetu-Chr10:21303707 Cmetu10g1171 Cmetu-Chr10:13437522 9.50E-38 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012743 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 28