Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1222 ATGGAAGGGAAACAAAGCGATGTGGTGTTGTTTGGAACATGGTATAGTTCATACTGCACTAGAATTGTGCTAGCACTCAAAATCAAAGGCATAAACTTTGAGTACATTGAAGAAGATTTAGCAAACAAGAGTGAATTGCTTCTCAAGTACAATCCAGTTCATCAAAAAGTCCCTGTACTCGTCCACAAAGGAAACCCAATTGCAGAATCCTTTGTCATTCTTGAATACATAGAAGAGCAATCGAACCACCATCCCAAAATTCTTCCTAACCATCCTTATGAAAGAGCCAAACTTCGCTTCTGGGCTCAATTCTATGATCAAAAGAAAGAGAGAGAGAGAGCTGTTGAGGAGCAATCAAAATTGATAAGGGTATTTGAAGATGGAATGAAGAAAGATTTTCCTGGAAAATTTTCATTCTACCACGGAAAAAGCTTGGGATTACTTGATATAGTTGTTGGGCCTAATGCTTGCAACTATTTGGTACTGCGTGACGTTGTTGGAGATGTAATTGATTCAAAAAGAAACCCTGATTTTTTCTCATGGGTGGATGCTTTGAAGGAACATCCTCTGATTAAGGAAGCTCTTCCTCCTCACCATAAAATGGTGAAGAAACTGAAAGAGAAGATCGCTCTAAAGCCTAAAGATAGCTGA 651 38.71 MEGKQSDVVLFGTWYSSYCTRIVLALKIKGINFEYIEEDLANKSELLLKYNPVHQKVPVLVHKGNPIAESFVILEYIEEQSNHHPKILPNHPYERAKLRFWAQFYDQKKERERAVEEQSKLIRVFEDGMKKDFPGKFSFYHGKSLGLLDIVVGPNACNYLVLRDVVGDVIDSKRNPDFFSWVDALKEHPLIKEALPPHHKMVKKLKEKIALKPKDS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19368592 19369370 + PI0019229.1 Cmetu10g1222 368085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1222 216 Pfam Glutathione S-transferase, N-terminal domain 8 78 IPR004045 -
Cmetu10g1222 216 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 66 205 IPR010987 -
Cmetu10g1222 216 SFLD Main.3: Omega- and Tau-like 5 209 IPR045073 -
Cmetu10g1222 216 Gene3D Glutaredoxin 1 87 - -
Cmetu10g1222 216 Gene3D - 88 214 - -
Cmetu10g1222 216 SUPERFAMILY GST C-terminal domain-like 84 207 IPR036282 -
Cmetu10g1222 216 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Cmetu10g1222 216 SFLD Glutathione Transferase (cytosolic) 5 209 IPR040079 -
Cmetu10g1222 216 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Cmetu10g1222 216 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 11 203 IPR045073 -
Cmetu10g1222 216 CDD GST_C_Tau 92 207 IPR045074 GO:0004364|GO:0006749
Cmetu10g1222 216 FunFam Tau class glutathione S-transferase 1 89 - -
Cmetu10g1222 216 SUPERFAMILY Thioredoxin-like 7 107 IPR036249 -
Cmetu10g1222 216 CDD GST_N_Tau 8 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1222 K00799 - - vvi:100260235 266.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1222 Cmetu-Chr10:19368592 Cmetu12g0608 Cmetu-Chr12:439232 3.10E-33 dispersed
Cmetu02g0734 Cmetu-Chr2:22497116 Cmetu10g1222 Cmetu-Chr10:19368592 4.00E-33 transposed
Cmetu06g0989 Cmetu-Chr6:1942583 Cmetu10g1222 Cmetu-Chr10:19368592 7.70E-40 transposed
Cmetu10g1222 Cmetu-Chr10:19368592 Cmetu12g1207 Cmetu-Chr12:437202 5.00E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28