Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1235 ATGGCGGCTCTATCTTCTTCTTCTTCACCATCTTCCTTCTTCTTCTCCACTGCTTCTCCTCACCCTAAACCAACCCGGTTCTCTAAACTTGTTCGTATGGCCTATCAGGAGAACGCTCCTTCTCTCGCCGTCGTCGGCGTCACCGGCGCCGTCGGCCAAGAATTCCTCTCCGTCCTTTCCGATCGTGATTTTCCTTATCGCTCCATCAAGATGCTGGCCTCCAAGCGTTCTGCTGGAAAGTCCGTTCGTTTCCAAGGTCAAGAGCATGTTGTCGAGGAGCTCACCGCGGATAGCTTCGATGGTGTGGACATTGCTCTCTTTAGCGCTGGAGGATCCATTAGCAAACACTTTGGACCGCTTGCTGTCGAGAAGGGGACTATTGTTGTTGATAATAGCTCTGCGTTTCGGATGGATGAGAATGTGCCTCTTGTTATTCCGGAGGTTAATCCTGAAGCTATGAAAGGGATTAAGGTTGGAAATGGCAAGGGCGCTTTGATTGCCAATCCTAATTGCTCAACTATCATCTGTTTGATGGCTGTTACTCCTCTGCATCGACACGCTAAGGTGTTACGTATGGTTGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCAATGGAAGAGCTTGTGCAACAAACTCGTGAGGTTCTTGAGGGAAAACCACCAACTTGTAATATATTTAGGGACCAGTATGCTTTCAATTTGTTCTCCCACAATGCCTCTGTTCTTTCAAATGGATACAATGAAGAGGAAATGAAGTTAGTAAAAGAAACCAGGAAAATATGGAGTGATGCAAATGTTAAAGTTACTGCCACTTGTATACGAGTTCCTGTCATGCGTGCACACGCCGAGAGTATAAATCTTCAATTTGAGAATCCCCTTGATGAGAATGCAGCCAGAGAGATTCTGAAAAATGCTCCTGGAGTGGTCATCATTGACGACCGAGAAGCCAACCAGTTTCCTACGCCCTTGAAAGTATCAAACAAAGATGACATTGCAGTTGGAAGGATTCGACAGGATGTTTCACTTGGTGGAAATAAAGGATTGGACATCTTCATCTGTGGGGATCAAATTCGCAAGGGTGCAGCGCTTAATGCAGTTCAGATCGCCGAGTTGTTACTGTAA 1131 46.33 MAALSSSSSPSSFFFSTASPHPKPTRFSKLVRMAYQENAPSLAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKSVRFQGQEHVVEELTADSFDGVDIALFSAGGSISKHFGPLAVEKGTIVVDNSSAFRMDENVPLVIPEVNPEAMKGIKVGNGKGALIANPNCSTIICLMAVTPLHRHAKVLRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFRDQYAFNLFSHNASVLSNGYNEEEMKLVKETRKIWSDANVKVTATCIRVPVMRAHAESINLQFENPLDENAAREILKNAPGVVIIDDREANQFPTPLKVSNKDDIAVGRIRQDVSLGGNKGLDIFICGDQIRKGAALNAVQIAELLL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1667886 1671372 - PI0005577.1 Cmetu10g1235 368098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1235 376 SMART Semialdhyde_dh_3 41 156 IPR000534 GO:0016620|GO:0051287
Cmetu10g1235 376 MobiDBLite consensus disorder prediction 1 22 - -
Cmetu10g1235 376 Gene3D Dihydrodipicolinate Reductase; domain 2 171 358 - -
Cmetu10g1235 376 Pfam Semialdehyde dehydrogenase, dimerisation domain 181 362 IPR012280 GO:0008652|GO:0016620|GO:0046983
Cmetu10g1235 376 NCBIfam aspartate-semialdehyde dehydrogenase 42 375 IPR005986 GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661
Cmetu10g1235 376 PIRSF ASA_dh 39 376 - -
Cmetu10g1235 376 Gene3D - 42 375 - -
Cmetu10g1235 376 Hamap Aspartate-semialdehyde dehydrogenase [asd]. 39 376 IPR012080 GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661
Cmetu10g1235 376 Pfam Semialdehyde dehydrogenase, NAD binding domain 42 155 IPR000534 GO:0016620|GO:0051287
Cmetu10g1235 376 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 30 376 - -
Cmetu10g1235 376 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 170 363 - -
Cmetu10g1235 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 198 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1235 K00133 - - csv:101206329 699.123
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g506 . . . . . Bpe10g01005 . Bma15g00024 Cmo04g01106 . Cma04g01035 . Car04g00966 Car04g00081 Sed04g2992 . . Bhi07g00410 Tan04g1488 Cmetu10g1235 Lac13g1310 Hepe01g0605 . . Cla07g00525 Cam07g0564 Cec07g0614 Cco07g0589 Clacu07g0565 Cmu07g0602 Cre07g0934 . . Cone6ag0356 Cone9ag0387 Lsi04g00990 . . . Blo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005424 1 1 1 1 2 1 2 1 1 0 1 1 2 0 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 37