Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1264 ATGGAGCTGACTACTCATGATCCTCCTATCCCCATCCCTATTCCTATCCCTTTAAATAGTCGTTACGCCGGTCACGACCACGACCACGACCACGACCATATCATCCACCACCATGACCCTTCTTCTACCCGTAACCATATCATTTCGGCTACTGTCAATGGTGGCAACCAAATGGAAGTGGATCTTCATCATCATAACAATAACAATAACAACAGCAAGAAGCATATCAAATACAAAGAGTGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCCACAGATGGTTGCGGTGAGTTCATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCTTGCAATTGTCATAGAAACTTCCATCGAAAAGAGATCGAAGGAGAACCCTATGATTGGCTCCACCACTCCCGCCTTGGGCGGAAGCTTCTCGTAGGTGGGAAGAACATGATCGGCCCACCAGAGCCTGCAGCATTCGCATACCCGACTGCAGGAGGGGCGACGTTCATATCATCTAGAGCAGCAACAACACAACCACACCACATGATAATGTCGTACAACATGATGGGTGGGGGCGGTGGGCACTCGGAGTCAGAGGAGCAGGAGGAAGGAATGGGAGCAGGAGTTGGGGGAAGGGTTTATTCGGGGGCGATGATGAATAAGAAACGATTTCGAACAAAGTTCACGGTGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAACAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAAGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGATACAATTTCACCTTCTCATTCTCCTAATAATCCCTTAAATTAA 900 47.56 MELTTHDPPIPIPIPIPLNSRYAGHDHDHDHDHIIHHHDPSSTRNHIISATVNGGNQMEVDLHHHNNNNNNSKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHSRLGRKLLVGGKNMIGPPEPAAFAYPTAGGATFISSRAATTQPHHMIMSYNMMGGGGGHSESEEQEEGMGAGVGGRVYSGAMMNKKRFRTKFTVEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDTISPSHSPNNPLN 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4711007 4712421 - PI0015389.1 Cmetu10g1264 368127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1264 299 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 58 282 - -
Cmetu10g1264 299 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 128 IPR006456 -
Cmetu10g1264 299 NCBIfam homeobox domain, ZF-HD class 223 279 IPR006455 -
Cmetu10g1264 299 MobiDBLite consensus disorder prediction 24 46 - -
Cmetu10g1264 299 Pfam ZF-HD protein dimerisation region 76 128 IPR006456 -
Cmetu10g1264 299 Gene3D - 212 285 - -
Cmetu10g1264 299 SUPERFAMILY Homeodomain-like 217 284 IPR009057 -
Cmetu10g1264 299 FunFam Zinc-finger homeodomain protein 2 212 284 - -
Cmetu10g1264 299 MobiDBLite consensus disorder prediction 24 43 - -
Cmetu10g1264 299 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1264 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1853 Cmetu-Chr7:4571934 Cmetu10g1264 Cmetu-Chr10:4711007 2.60E-30 dispersed
Cmetu08g0546 Cmetu-Chr8:20960419 Cmetu10g1264 Cmetu-Chr10:4711007 3.90E-43 dispersed
Cmetu08g1301 Cmetu-Chr8:21673399 Cmetu10g1264 Cmetu-Chr10:4711007 4.40E-39 dispersed
Cmetu09g1945 Cmetu-Chr9:19775919 Cmetu10g1264 Cmetu-Chr10:4711007 1.20E-16 dispersed
Cmetu10g0522 Cmetu-Chr10:19375279 Cmetu10g1264 Cmetu-Chr10:4711007 4.50E-29 dispersed
Cmetu10g1264 Cmetu-Chr10:4711007 Cmetu12g1743 Cmetu-Chr12:1744703 2.40E-28 dispersed
Cmetu10g1264 Cmetu-Chr10:4711007 Cmetu03g1591 Cmetu-Chr3:2757731 2.60E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8645 PF04770 ZF-HD_dimer 4.50E-29 No_clan Cmetu TF