Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1323 ATGGCAGGTGAATTAGTAGAATTTGAAGAGGGTACTATAGGCATAGCTCTAAATTTAGAATCAAATAATGTTGATGTTGTATTAATGGGTGATGGTTTGCTGATACAGGAGGGAAGTTCTGTAAAAGCAACGGGAAGAATTGCTCAGATACCTGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTCAACCTATTGATGGCCGAGGTGAAATTTCATCTTCTGACTCTCGGTTAATTGAATCCCCCTCTCCTGGTATTATTCCGAGACGTTCCGTATACGAGCCTCTTCAAACAGGACTTATTGCTATTGATTCGATGATTCCTATCGGACGTGGTCAGCGAGAATTAATTATTGGGGACAGGCAGACCGGTAAAACTGCAGTAGCCATGGATACGATTCTCAATCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTAGTGACTACTTTACAGGAAAGGGGTGCAATGGAATACACTATTATAGTAGCCGAAACGGCGGATTCTCCGGCTACATTACAATACCTTGCCCCTTATACAGGAGCAGCTTTGGCTGAATATTTTATGTACAGAAAACAACACACTTTAATCATTTATGATGATCCCTCCAAACAAGCACAAGCTTATCGACAAATGTCTCTTCTTTTACGAAGACCGCCGGGCCGCGAAGCTTATCCGGGCGATGTTTTTTTATTTGCATTCACGCCTTTTGGAAAGAGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCGGGAGATGTTTTAGCTTATATTCCTACTAATGTAATTTCCATTACCGATGGACAAATATTCTTATCTACCGATCTATTCAATGCTGGAATCAGACCTGCTATTAATGTGGGTATTTCCGTCTCCAGAGTAGGATCTGCAGCTCAAATTAAAGCCATGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCTCAATTTGCCAAATTAGAAGCCTTTGCGCAATTCGCTTCTGTTCTTGATAAAGCTACTCAGAATCAATTGGCAAGAGGTCAACGATTACGTGAGTTGCTCAAACAATCCCAATCAGCACCTCTAACGGTAGACAAACAGATAATGACTGTTTATACCGGAACTAATGGTTATCTTGATTCATTAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACTTACGTAAAAACGAATAAACCTCAGTTTCAAGAAATAATCTCTTCCACGAAGACATTCACCAATGAAGCGAAAGCCCTTTTGAAAGAAGCTATTCAGGAACAGATGGAACGTTTTCTACTTCAAAACCAAGTATAA 1350 39.93 MAGELVEFEEGTIGIALNLESNNVDVVLMGDGLLIQEGSSVKATGRIAQIPVSEAYLGRVINALAQPIDGRGEISSSDSRLIESPSPGIIPRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVAMDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETADSPATLQYLAPYTGAALAEYFMYRKQHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFLFAFTPFGKRSMTALPIVETQSGDVLAYIPTNVISITDGQIFLSTDLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAKLEAFAQFASVLDKATQNQLARGQRLRELLKQSQSAPLTVDKQIMTVYTGTNGYLDSLEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAKALLKEAIQEQMERFLLQNQV 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10822453 10823833 - PI0022850.1 Cmetu10g1323 368186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1323 449 FunFam ATP synthase subunit alpha 47 314 - -
Cmetu10g1323 449 NCBIfam F0F1 ATP synthase subunit alpha 1 443 IPR005294 GO:0015986|GO:0045261|GO:0046933
Cmetu10g1323 449 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 47 IPR036121 GO:0046034|GO:1902600
Cmetu10g1323 449 CDD F1-ATPase_alpha_CD 47 310 IPR033732 GO:0032559
Cmetu10g1323 449 Gene3D - 1 47 IPR023366 -
Cmetu10g1323 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 313 IPR027417 -
Cmetu10g1323 449 ProSitePatterns ATP synthase alpha and beta subunits signature. 298 307 IPR020003 GO:0005524
Cmetu10g1323 449 Gene3D - 48 314 IPR027417 -
Cmetu10g1323 449 Pfam ATP synthase alpha/beta chain, C terminal domain 314 438 IPR000793 GO:0015986
Cmetu10g1323 449 FunFam ATP synthase subunit alpha 315 445 - -
Cmetu10g1323 449 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 315 443 - -
Cmetu10g1323 449 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 102 307 IPR000194 GO:0005524
Cmetu10g1323 449 CDD ATP-synt_F1_alpha_C 318 443 IPR000793 GO:0015986
Cmetu10g1323 449 Pfam ATP synthase alpha/beta family, beta-barrel domain 1 45 IPR004100 GO:0046034|GO:1902600
Cmetu10g1323 449 CDD ATP-synt_F1_alpha_N 1 46 - -
Cmetu10g1323 449 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 443 IPR005294 GO:0015986|GO:0045261|GO:0046933
Cmetu10g1323 449 Hamap ATP synthase subunit alpha [atpA]. 1 444 IPR005294 GO:0015986|GO:0045261|GO:0046933
Cmetu10g1323 449 Gene3D - 315 443 IPR038376 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1323 K02111 - - rcu:11542288 783.867
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g198 . . . . . Bpe12g00130 . . Cmo19g00765 Cmo11g01753 . . . . Sed05g2251 Cpe04g00605 Cpe15g00607 Bhi05g01684 Tan02g0657 Cmetu10g1323 . . . . Cla02g00408 Cam02g0414 Cec02g0413 Cco02g0431 Clacu02g0417 Cmu02g0413 Cre02g0748 Cone12ag1245 . . . . Csa07g00121 . Cme01g01238 Blo04g00583 Blo13g00496 Bda15g01024 Bda14g00625 Bpe15g00802 . Bma03g00617 Bma08g00610 . . . Cma11g01365 Cma19g00752 . Car19g00587 . . . . . . . . . . . . . . . . Lsi11g01217 . Chy01g00662 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000369 7 4 2 5 0 4 0 9 3 2 4 5 16 8 1 1 4 2 0 4 3 1 0 0 1 2 4 2 2 0 96