Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1328 ATGGCTTCAATCTCTTCAAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGTCGCACTGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCTGAGGAAGTTCCATCCGAGCTCCCTGAACCTGCGTTGGGGATCAATTTTGCCAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCTAGAAACAGCACAAAGGTGAAGAGGTCACTAGATGGGTCGACTAGAAACAGCAATCCAAAACTACTTGAAGAGAGTTATGGAGAGGACGAAGATGAGCACGGTGATACACAATGTGGAAGCTGTGGTGGGAACTACAATGCGGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACTGTAG 732 46.99 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKVKRSLDGSTRNSNPKLLEESYGEDEDEHGDTQCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRL 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14679758 14690100 - PI0005081.2 Cmetu10g1328 368191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1328 243 ProSiteProfiles Zinc finger PHD-type profile. 187 239 IPR019787 -
Cmetu10g1328 243 PANTHER CPG BINDING PROTEIN 7 242 IPR045104 GO:0006355|GO:0042393
Cmetu10g1328 243 SMART PHD_3 189 237 IPR001965 -
Cmetu10g1328 243 MobiDBLite consensus disorder prediction 141 185 - -
Cmetu10g1328 243 CDD PHD_AL_plant 189 239 IPR044104 -
Cmetu10g1328 243 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Cmetu10g1328 243 SUPERFAMILY FYVE/PHD zinc finger 178 240 IPR011011 -
Cmetu10g1328 243 MobiDBLite consensus disorder prediction 141 160 - -
Cmetu10g1328 243 Pfam PHD-finger 190 238 IPR019787 -
Cmetu10g1328 243 ProSitePatterns Zinc finger PHD-type signature. 190 236 IPR019786 -
Cmetu10g1328 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 238 IPR013083 -
Cmetu10g1328 243 FunFam PHD finger alfin-like protein 182 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1328 K26274 - - csv:101211934 496.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2633 Cmetu-Chr4:3977118 Cmetu10g1328 Cmetu-Chr10:14679758 2.80E-19 dispersed
Cmetu06g1618 Cmetu-Chr6:23100182 Cmetu10g1328 Cmetu-Chr10:14679758 9.40E-74 dispersed
Cmetu10g1328 Cmetu-Chr10:14679758 Cmetu08g0029 Cmetu-Chr8:22903165 9.50E-100 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1618 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 2.1e-113 405.6
Cmetu03g1113 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.3e-96 349.0
Cmetu01g2478 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 1.2e-92 336.7
Cmetu08g0029 . 3 237 Alfin-like Transcription Factor Family AT1G14510 59.2 2.1e-78 289.3
Cmetu10g1328 . 8 240 Alfin-like Transcription Factor Family AT1G14510 57.3 2.3e-72 269.2
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.6e-108 388.7
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT5G26210 63.7 1.4e-96 349.7
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 8.2e-94 340.5
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT5G26210 61.9 1.5e-79 293.1
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.1 2.0e-79 292.7
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 5.2e-101 364.4
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 8.6e-96 347.1
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.4e-90 328.9
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.3 9.5e-79 290.4
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT3G42790 63.1 3.6e-78 288.5
Cmetu08g0029 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.1 2.1e-107 385.6
Cmetu10g1328 . 1 242 Alfin-like Transcription Factor Family AT5G05610 70.2 4.2e-100 361.3
Cmetu03g1113 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 2.1e-91 332.4
Cmetu01g2478 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 1.8e-90 329.3
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.2e-83 306.6
Cmetu08g0029 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.2 9.5e-89 323.6
Cmetu10g1328 . 43 242 Alfin-like Transcription Factor Family AT3G11200 70.8 7.3e-81 297.4
Cmetu03g1113 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 2.1e-75 279.3
Cmetu01g2478 . 44 250 Alfin-like Transcription Factor Family AT3G11200 66.2 3.5e-75 278.5
Cmetu06g1618 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.9e-69 258.8
Cmetu06g1618 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.6e-76 283.1
Cmetu03g1113 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.7e-65 245.0
Cmetu01g2478 . 10 160 Alfin-like Transcription Factor Family AT2G02470 76.8 5.7e-63 238.0
Cmetu08g0029 . 3 135 Alfin-like Transcription Factor Family AT2G02470 72.6 6.4e-54 208.0
Cmetu10g1328 . 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 9.2e-53 204.1
Cmetu03g1113 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 7.0e-74 273.9
Cmetu01g2478 . 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 5.2e-69 257.7
Cmetu06g1618 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 8.3e-67 250.4
Cmetu08g0029 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 4.4e-52 201.4
Cmetu10g1328 . 7 136 Alfin-like Transcription Factor Family AT5G20510 68.9 1.3e-51 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8651 PF12165 Alfin 2.20E-67 No_clan Cmetu TF