Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1346 ATGGCGGAAACCGGCGTATATGGGCGGTTTTTAGCGGGGAGTTTAGACCCAAGAGCTCAAGAGTTCCGGCCAAGATATTCGACTACTTTGTTTTTGCCGCAACCCCATCGGGTTTTCTTTCCGTACCCACCAATTAGCGACGTTCCCCTCCTGCCGTTTTGCGAGACCGGTGTAACTTACCCGCCGTTTCCAACGGCGGACTCGGCGTATGTTCAGGTACGGTCGCCGGTGTCGTCGGTTGCGACTCGGTCGTTGGTGGTGAGTTCGGTTCCTTGCGACGTAAGCGAGACGATGGTGAGGAGGGAATTGGAAGAATTTGGGGAGATTCGAGGAGTGCAAATGGAGAGAGTTAAAGAAGGGATTGTAATCGTTCATTTCTATGATATTCGCCATGCGGAGAGAGCTTTGCGAGAGATCCGGGATCAGCACATGCACCATCAATGTCGTCTTCGTAACTACTTCAACAATAACAACAACAACAATAACGGTTTCTTGTTATCAAATTCCTCTCTGCCCCGCCCTTCTCCGGCGCCTGGCCTCATCGCCGGCCAGGCTGTTTGGGCTCAGTTCATCGTTCCGGCTGGGAAAAATCAGGGCACCATCGTTATCTTCAATCTTGATTCCACCGTTTCCACTTCTTGTCTCAGAGAAATCTTTGAACGTTTTGGTCAAGTGAAGGAGTTGAGAGAGACGCCACTGAAGAAACAACAAAGATTCGTGGAATTTTTCGACATCAGGGACGCCGGAAAAGCTCTTAAGGAGATGAACGGAAAAGAAATCAATGGAAAATCTGTTTTGATTGAGTTCAGTCGTCCTGGCGGCCATGGGAACAAGTTCTTCAATGCTAACTTAACTACTCCGGCCATCTGTGGCTCGAATAATATATACTCCAGGAGTTTAAAATGCCCACCGTCACGACCTCCACCGCCGCCGCCGCCGAGAAATTTCTCTGGTGGGGTAGGTTCAAATGTTCCGCCGCGGTGGTATTACTCGAAACCCCATACTTCCTCGAGGAAATGGAATCTCAACAAGGGAAGTCGAAGCCCGAGAAACCCTCGGAAGGGCTCGGAGTCCGATGATGTGAACGGAAAAATGGGTTCTGTTGATTTGAATGCCGGCGGTGAGTGTAATGAAATTGAAGAGCGAGAATCATTTGGGGTTTTGAGAAAGAATTCAAAGAACAGCTATAGTAGTTCTTCTGTTGGTGCTGATCAACAACAAGTGCAGCCCAGTAGGAATAAGCTAAGAAAATGTAGGCAATCCAGGAAGTTCGATTCTCGATTCTTGATAAACGACAATGATTCCGATTGCAGAGATTCGAGAACTACTGTGATGATCAAGAACATCCCCAACAAATACAGTCAGAAATTGTTATTGAACATGCTGGACAATCACTGTATTCATTGCAACGAGCAAATGGACGACGACCATAACGAGCCACTTTCTTCCTATGATTTTGTTTATCTCCCCATTGATTTCAACAATAAGTGCAATGTTGGATATGGGTTTGTAAACATGACCTCACCAGAGGCTACGTGGAGGTTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTTAACTCCAGAAAAATCTGTGAGGTCACTTATGCTAGAGTACAGGGACTGGAATCACTGAAGGAGCACTTTAAAAACTCAAAGTTCCCGTGCGAGATGGACCACTACTTGCCAGTGGTGTTTTCGCCGCCTCGGGACGGGAGGAAACTGACGGAGCCAATGCCAATTGGTGGGCAGAGACAGTCAATCACCATTGCCCTCTCAACTACTCCATCTTGTTCTGGGAATGATGAGATGGAGGGTGAAGAAGATGATGTTGCAACAACAACACTGGTTGACCAACAGGGGAAAAGCATGAAAGGAAACAACAGCAGCAGCAACAGTAGCAGTGGAAGCATTGATGAAGAAGACACAGACGGTGATGAGTATCAAGTTTCTTAA 1959 47.32 MAETGVYGRFLAGSLDPRAQEFRPRYSTTLFLPQPHRVFFPYPPISDVPLLPFCETGVTYPPFPTADSAYVQVRSPVSSVATRSLVVSSVPCDVSETMVRRELEEFGEIRGVQMERVKEGIVIVHFYDIRHAERALREIRDQHMHHQCRLRNYFNNNNNNNNGFLLSNSSLPRPSPAPGLIAGQAVWAQFIVPAGKNQGTIVIFNLDSTVSTSCLREIFERFGQVKELRETPLKKQQRFVEFFDIRDAGKALKEMNGKEINGKSVLIEFSRPGGHGNKFFNANLTTPAICGSNNIYSRSLKCPPSRPPPPPPPRNFSGGVGSNVPPRWYYSKPHTSSRKWNLNKGSRSPRNPRKGSESDDVNGKMGSVDLNAGGECNEIEERESFGVLRKNSKNSYSSSSVGADQQQVQPSRNKLRKCRQSRKFDSRFLINDNDSDCRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQMDDDHNEPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLESLKEHFKNSKFPCEMDHYLPVVFSPPRDGRKLTEPMPIGGQRQSITIALSTTPSCSGNDEMEGEEDDVATTTLVDQQGKSMKGNNSSSNSSSGSIDEEDTDGDEYQVS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18061576 18064812 + PI0011290.1 Cmetu10g1346 368209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1346 652 MobiDBLite consensus disorder prediction 327 373 - -
Cmetu10g1346 652 Pfam RNA recognition motif 2 441 551 IPR007201 -
Cmetu10g1346 652 SUPERFAMILY RNA-binding domain, RBD 199 520 IPR035979 GO:0003676
Cmetu10g1346 652 SMART rrm1_1 84 151 IPR000504 GO:0003723
Cmetu10g1346 652 SMART rrm1_1 200 268 IPR000504 GO:0003723
Cmetu10g1346 652 MobiDBLite consensus disorder prediction 392 419 - -
Cmetu10g1346 652 MobiDBLite consensus disorder prediction 392 414 - -
Cmetu10g1346 652 MobiDBLite consensus disorder prediction 614 639 - -
Cmetu10g1346 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Cmetu10g1346 652 MobiDBLite consensus disorder prediction 334 349 - -
Cmetu10g1346 652 FunFam Terminal EAR1-like 1 390 547 - -
Cmetu10g1346 652 CDD RRM3_EAR1_like 441 542 IPR034458 -
Cmetu10g1346 652 Gene3D - 78 155 IPR012677 -
Cmetu10g1346 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 157 IPR000504 GO:0003723
Cmetu10g1346 652 MobiDBLite consensus disorder prediction 301 320 - -
Cmetu10g1346 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Cmetu10g1346 652 Gene3D - 194 278 IPR012677 -
Cmetu10g1346 652 PANTHER RNA RECOGNITION MOTIF-CONTAINING 76 570 - -
Cmetu10g1346 652 MobiDBLite consensus disorder prediction 302 316 - -
Cmetu10g1346 652 SUPERFAMILY RNA-binding domain, RBD 77 146 IPR035979 GO:0003676
Cmetu10g1346 652 MobiDBLite consensus disorder prediction 595 652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1346 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu09g1685 Cmetu-Chr9:13887956 Cmetu10g1346 Cmetu-Chr10:18061576 3.10E-31 dispersed
Cmetu05g0911 Cmetu-Chr5:21018490 Cmetu10g1346 Cmetu-Chr10:18061576 2.30E-36 transposed
Cmetu11g1451 Cmetu-Chr11:1374601 Cmetu10g1346 Cmetu-Chr10:18061576 7.80E-11 transposed
Cmetu10g1346 Cmetu-Chr10:18061576 Cmetu03g0540 Cmetu-Chr3:293559 1.70E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54