Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1427 ATGAGGTTCTTGTGTGTAAAAAAAGTTCTTCATTTAAGAAGCTTGAGAGAATCCTCAAGTTGTCCATGGCTTTTTTCTGCCATTTCTTACTACTCAGATACTCCCAAAAAGAAGTCTAAGCTTGCCCCTTTACAGGAGAGGAGAATGATGGACAGGTTTAAGGTGTATGCTAAAGGAGGTGATGGTGGAAATGGTTGCCAAAGCATGCGGCGTAGTAGGCACGAACGCCACGGTCAACCTGATGGTGGAGATGGTGGAAGAGGGGGTGACGTGATCCTGGAATGTTCCACTGCTCTATGGGACTTCAGCAGTTTGAATCATCATATTAATGCGGGTAGAGGAGGACATGGATCTTCAAAGAATAAGATTGGAACTAAGGGTGCAGATAAGATTGTACGAGTACCAATTGGCACTGTGATTCATCTTGTGGAGGGTGAAGTTCCCAGTGTAGTCAAGCATCATTCTTTAACAGATTTAGATCCTTGGCAGATTCCTGGCACACTTGTTGATGATCTCTCTAGTTCCCACCAGATGTCTTTTAAATTTTCAAACAGAGAAACGGAAGTTGAATCGGCATTTAAGACTACTCTCGTGACATGTAATGATAGTAAAATTAATGTTAGAAATTCGTTGTTCAGGAGGGAAACTTCTGAAGTAGCATCAACCAATGAGATTTCTCAAGTTTCTGCATTTCCTGACAGTTCTATTCAAGATCAGTTTGGAGAAAGTGAAGAAATGATGTACAATGTTGCAGAATTGACTGAAGAAGGTCAACGAATTATCATTGCTCGAGGAGGGGAAGGTGGTTTGGGCAATGTTCATGAACACAAACTTTCAAAGAAGCCTAAAGCCTCTATGGGGCAAGAGGATGAGTCCATAGATTCTAACGTATCCGAAATCAACGAGCCCAACAGACGAACTGGTTCTCGTGGTAGCGAGGCCATACTTGTTTTAGAACTTAAAAGCATTGCGGACGTGGGTTTCGTTGGAATGCCAAATGCTGGGAAAAGTACTTTGCTTGGAGCCATTTCCAGAGCAAAACCAACAGTTGGTCATTATGCATTCACAACCCTGAGGCCAAATTTGGGAAACCTGCAATATGATGACTTATCAATCACGGTAGCTGACATTCCAGGTCTTATAAAGGGTGCCCACGAAAATCGTGGACTTGGACACTCATTCTTGCGTCACATTGAACGCACGAGGGTCCTAGCATATGTCCTAGACTTAGCTGCTGCTTTAGATGGTAGGAAAGGGATACCCCCATGGGAACAACTGAGAGATTTAGTTTATGAGCTTGAACGCCATCAGAACGGGTTATCAGATCGGCCATCCTTAATAGTGGCTAACAAGATCGATGAAGAAGGGGCCGAGGAAGTGTATGAAGAGTTAAAGTCTAGAGTGCATGGAGTTCTCATCTTTCCCGTTTGTGCTGTTTTGGAAGAGGGCGTTGATGAGCTTAAAGCTGGTCTTAAGAGCCTTGTGAATGGAGATACGCCTAGTAGGCTTAAGATAGATGAAATTATTGTTCAATAG 1536 43.16 MRFLCVKKVLHLRSLRESSSCPWLFSAISYYSDTPKKKSKLAPLQERRMMDRFKVYAKGGDGGNGCQSMRRSRHERHGQPDGGDGGRGGDVILECSTALWDFSSLNHHINAGRGGHGSSKNKIGTKGADKIVRVPIGTVIHLVEGEVPSVVKHHSLTDLDPWQIPGTLVDDLSSSHQMSFKFSNRETEVESAFKTTLVTCNDSKINVRNSLFRRETSEVASTNEISQVSAFPDSSIQDQFGESEEMMYNVAELTEEGQRIIIARGGEGGLGNVHEHKLSKKPKASMGQEDESIDSNVSEINEPNRRTGSRGSEAILVLELKSIADVGFVGMPNAGKSTLLGAISRAKPTVGHYAFTTLRPNLGNLQYDDLSITVADIPGLIKGAHENRGLGHSFLRHIERTRVLAYVLDLAAALDGRKGIPPWEQLRDLVYELERHQNGLSDRPSLIVANKIDEEGAEEVYEELKSRVHGVLIFPVCAVLEEGVDELKAGLKSLVNGDTPSRLKIDEIIVQ 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21874571 21877634 + PI0012235.1 Cmetu10g1427 368290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1427 511 PRINTS GTP1/OBG GTP-binding protein family signature 374 389 IPR006073 GO:0005525
Cmetu10g1427 511 PRINTS GTP1/OBG GTP-binding protein family signature 326 346 IPR006073 GO:0005525
Cmetu10g1427 511 PRINTS GTP1/OBG GTP-binding protein family signature 391 409 IPR006073 GO:0005525
Cmetu10g1427 511 PRINTS GTP1/OBG GTP-binding protein family signature 347 365 IPR006073 GO:0005525
Cmetu10g1427 511 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 36 493 IPR045086 GO:0003924|GO:0005525
Cmetu10g1427 511 CDD Obg 324 495 IPR031167 GO:0005525
Cmetu10g1427 511 MobiDBLite consensus disorder prediction 68 83 - -
Cmetu10g1427 511 MobiDBLite consensus disorder prediction 59 88 - -
Cmetu10g1427 511 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 324 496 IPR031167 GO:0005525
Cmetu10g1427 511 Pfam GTP1/OBG 50 143 IPR006169 -
Cmetu10g1427 511 PIRSF GTP-binding_obg 46 507 IPR014100 GO:0000287|GO:0003924|GO:0005525
Cmetu10g1427 511 ProSiteProfiles Obg domain profile. 47 323 IPR006169 -
Cmetu10g1427 511 SUPERFAMILY Obg GTP-binding protein N-terminal domain 49 277 IPR036726 -
Cmetu10g1427 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 495 IPR027417 -
Cmetu10g1427 511 Gene3D - 323 502 IPR027417 -
Cmetu10g1427 511 Gene3D GTP1/OBG domain 49 322 IPR036726 -
Cmetu10g1427 511 Pfam 50S ribosome-binding GTPase 325 451 IPR006073 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1427 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0012 Cmetu-Chr6:4846426 Cmetu10g1427 Cmetu-Chr10:21874571 2.80E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012289 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 0 1 1 1 2 1 1 1 28