Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1483 ATGGCTAACGATACTGCTCACCGGAAGCACCGCCGATCTGCTTCCGATGAAGACGATGATAAATCTTCGAAGCGTCACAAACACCGTCACCATCGCCGCCACCACCGACATCGTCACAGCAGCAATAAGAACGAAGAAGAAAGCTGCCGTGACCGGGAGGATAGTGTTCCTCCCGCTGCTAATCGAAGATCTCGGCCTGAAGATGACGTCGAGGAAGGTGAAATTCTGGAAGAGGACGAGTCTGGTGTTCGCGAGAACGAGGGCGCGACGAAGGAGGTGGATGTGGAATTTGGGAAACTTGAAGCTGATGAAATTTCTGATCGAATTGACCAGCCCGCTATGGAGTGTCATTCGGTGGATGAATCATCTAATAACAAGGCTAATTTTATTGTGAAGGAGGGGGCAGGCAACAGTGCTCAAGATCGGAAGACCTCGAAAGTGGACAGTAAGTTCTATAATTTAGATAAGGACAAAGGTGGCTACTATCTAAAAAAAGGCACAAACAAGGAAAACATGATTCTCTATCAAACTGACTCTGGTTGTAAGCATGACAATGATGCTAGCTTTTCCATGAGTGAAGTGGCTGGAACTAAATACAATAATCTTGAACGTTGCCGAGAGGGTCATAGCAAAGGGGATTTTGATCATGAATCTCTGGAGTTAGATGAGAAGCTGCACAAACGAATGGCATCTCCTTCTAAAGGGGCTACTAAGAAAATAAGCAACAATGGCAATGGAAAGGTGACAACAGATGGAAACACCTTGGGGAATGAGAAAAGGCCACAGTTAGAAAGGACTGAAGGCAAGTCCGAGGATTTTACGCCATCAACATCTCACGATCAATTCATCGATGCATCAGATTGTAGGAGTAGATCGAGGTCAAATTGTCATTCTAGGGGACAATCTCAGTCTCGTGAAACAGTAGAAGAGGAGGCAGAGTCAAAGAGTAGACATTATCATGGTTGGGATCACCCAATGTTTGATGATAAAAGTAAAATTCACAATGACTTGGATGATGATTACACTGAATGTGTTAGGGGAGAGGGAAGGCATCGAAGCAGGGACACGAAGGACAACGGGAGAAGTAAGATGGAGGTGGATAGGGAATGGTCCAAGGAAAATGAAATGGAAAAAAACAAAGATAAAGATAGGGGGGTAGATAAGCAAAAGTATGATGAGAGAGAGAGAGGTAGGAGTAAGGATAGACGAAAGGAGATGGAACGAAAGAGGAGCAGGGAAAGAGAGTTGGAGAGGGATAGGAGGAGGGAAAGGGATGTGGAAAGAGATAGGAGAGGGAAGGAAAGAGGTTGGAGTAGGGAAAGAGAGGTGCAAAGAGATAGAAGAGTGGAGAGGGAAAGAGGTTGGAGTAGGGAAAGAGAGGCAGAAAGGGATAGAAGAACCGAGAAGGAGAGAGAAAGATGTAGGAGCACCGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGACAAAGATAGGAGCAAGGATAAAGAAGTGGATTGGGATGGGAGAAGGGATAGGGACAGGGATCGGAATGATGATAAGTCTGAATATAGTGATAGAAATAGAGACAGGGAGAGGGTGAGAGAGATGCAAAAAGATCGGTTTAGGGATAAAGAATTAGATAGGGAGAGACACGACGATAGAAACAAAAACAAAACCAGTGACAGTTTAAGTAGTAAAGATAAGTATGGGAATCTTGAATATGGCTACATTAAAGGTTCTAAGCAGTCTAGGCATTATGATAATGAATTTGGTTTGGATGGGGGAAGAATTAATGCTGTTGAAAAACATGGTAGTTTTAAGAGAAGCACTCGTGAAGAAGGTGAAGACAAGCTAATGAGTGATCATGACGAGGAGGAAGAGGATGGAGACGGCATGCCATATCACTTAGCTGATGAAGAAGAGGAGGATCTTAACAGGATCAAAGAGGAGAGTAGAAGACGGAGACAAGCAATCTTAGAAAAATATAAATGCCAGCAGTTAGAGAAACAGGTAGAGGCTTCTTTGAAGGAATCCGAGAAAGATAAGGATTCTGGAAATGATTCTTCTCAATCAGAAGCTGCCGCTCATGCTATTCCAGAATTGGTTGAAGGGGCAGTGGATGATTGTGTTGCTGACTCATCTTTTATTGTGGAGAAATCACCACATCAAAATGGAGTAATTGCATCTGATAAAACTGCTGGTACTAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGATGGATTATTCTGTGATGACATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGAAAAGGTGATGGTTTGCAGATAGAGAGGAGTGGTCTTCATGACAATTGGGATGATGCAGATGGATATTATAACTATCGATTTGGTGAAGTGCTTGATAGTCGGTATGAAATTGCTGCTGCTCATGGCAAAGGTGTCTTTTCAACTGTGGTCCGTGCAAAGGATCTCAAAGCTGGTCCTGGCGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACAATGTACAAGGCTGGTCTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAATTGTGGTGTTCTCCACTGTGATATAAAGCCAGATAATATGCTGGTTAACGAGGGGAAAAATGTGCTGAAGCTTTGTGATTTTGGTAATGCTATGTTTGCTGGTAAAAATGAAATCACACCATACCTTGTTAGCCGGTTTTACCGTGCACCTGAAATAATTTTAGGGCTGTCATATGACCATCCAATGGATATCTGGTCGGTGGGTTGCTGTTTGTACGAGCTCTCTACAGGGAAAGTTCTTTTTCCAGGTCCTTCTAATAATGACATGCTGCGCCTACACATGGAATTAAAGGGCCCTTTTCCAAAGAAGATGCTTCGTAAGGGAGCATTTACTGACCAACATTTTGACCAGGACCTGAACTTCCATGCTTCTGAGGAGGATCCTGTAACCAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGGTCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCAAATTTTAAGGATCTTCTAGACAAAATTTTTGTGTTGGATCCAGAAAAAAGGATGACAGTATCACAAGCATTGAATCATCCATTCATCACTGGCAAGTGA 3351 42.85 MANDTAHRKHRRSASDEDDDKSSKRHKHRHHRRHHRHRHSSNKNEEESCRDREDSVPPAANRRSRPEDDVEEGEILEEDESGVRENEGATKEVDVEFGKLEADEISDRIDQPAMECHSVDESSNNKANFIVKEGAGNSAQDRKTSKVDSKFYNLDKDKGGYYLKKGTNKENMILYQTDSGCKHDNDASFSMSEVAGTKYNNLERCREGHSKGDFDHESLELDEKLHKRMASPSKGATKKISNNGNGKVTTDGNTLGNEKRPQLERTEGKSEDFTPSTSHDQFIDASDCRSRSRSNCHSRGQSQSRETVEEEAESKSRHYHGWDHPMFDDKSKIHNDLDDDYTECVRGEGRHRSRDTKDNGRSKMEVDREWSKENEMEKNKDKDRGVDKQKYDERERGRSKDRRKEMERKRSRERELERDRRRERDVERDRRGKERGWSREREVQRDRRVERERGWSREREAERDRRTEKERERCRSTDREGNRDRRRERDKDRSKDKEVDWDGRRDRDRDRNDDKSEYSDRNRDRERVREMQKDRFRDKELDRERHDDRNKNKTSDSLSSKDKYGNLEYGYIKGSKQSRHYDNEFGLDGGRINAVEKHGSFKRSTREEGEDKLMSDHDEEEEDGDGMPYHLADEEEEDLNRIKEESRRRRQAILEKYKCQQLEKQVEASLKESEKDKDSGNDSSQSEAAAHAIPELVEGAVDDCVADSSFIVEKSPHQNGVIASDKTAGTKGLGEGTPKAEGSDGLFCDDIFGETPAAVRKMGKGDGLQIERSGLHDNWDDADGYYNYRFGEVLDSRYEIAAAHGKGVFSTVVRAKDLKAGPGEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLSYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGK 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20307242 20312833 - PI0009789.1 Cmetu10g1483 368346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 258 274 - -
Cmetu10g1483 1116 CDD STKc_PRP4 797 1113 IPR044092 GO:0004674|GO:0006468|GO:0045292
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 614 632 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 228 566 - -
Cmetu10g1483 1116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672|GO:0006468
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 667 689 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 596 613 - -
Cmetu10g1483 1116 Coils Coil 632 652 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 235 257 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 303 558 - -
Cmetu10g1483 1116 SUPERFAMILY Protein kinase-like (PK-like) 785 1115 IPR011009 -
Cmetu10g1483 1116 FunFam serine/threonine-protein kinase PRP4 homolog 768 857 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 1 99 - -
Cmetu10g1483 1116 Gene3D Phosphorylase Kinase; domain 1 768 857 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 596 642 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 82 99 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 25 39 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 40 70 - -
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 1 24 - -
Cmetu10g1483 1116 SMART serkin_6 798 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu10g1483 1116 MobiDBLite consensus disorder prediction 667 682 - -
Cmetu10g1483 1116 Pfam Protein kinase domain 803 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu10g1483 1116 Gene3D Transferase(Phosphotransferase) domain 1 858 1114 - -
Cmetu10g1483 1116 ProSiteProfiles Protein kinase domain profile. 798 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu10g1483 1116 FunFam Serine/threonine-protein kinase PRP4 homolog 858 1114 - -
Cmetu10g1483 1116 PANTHER DUAL SPECIFICITY PROTEIN KINASE 471 1114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1483 K08827 - - csv:101220260 1896.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1483 Cmetu-Chr10:20307242 Cmetu12g0652 Cmetu-Chr12:187178 4.40E-43 dispersed
Cmetu03g0841 Cmetu-Chr3:3631656 Cmetu10g1483 Cmetu-Chr10:20307242 4.10E-44 transposed
Cmetu03g1180 Cmetu-Chr3:24737874 Cmetu10g1483 Cmetu-Chr10:20307242 4.40E-41 transposed
Cmetu08g2015 Cmetu-Chr8:22078593 Cmetu10g1483 Cmetu-Chr10:20307242 8.70E-40 transposed
Cmetu09g0437 Cmetu-Chr9:4284846 Cmetu10g1483 Cmetu-Chr10:20307242 1.40E-37 transposed
Cmetu12g0906 Cmetu-Chr12:2740468 Cmetu10g1483 Cmetu-Chr10:20307242 7.20E-42 transposed
Cmetu10g1483 Cmetu-Chr10:20307242 Cmetu12g0117 Cmetu-Chr12:5158957 2.10E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70786 PF00069 Pkinase 3.00E-46 CL0016 Cmetu PK