Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1537 ATGGCCGACCCTCCCACCAGTCCTGCCGGCGGCAGCCACGAAAGCGGCGGTGAACAAAGCCCTAACACTGCTTCTGCCGTTCGTGAACAAGATCGTTTCCTTCCCATCGCTAATATTAGTCGGATCATGAAGAAAGCTTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGTGTTTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAAAAAGAGAAGAGGAAGACTATTAATGGTGATGATTTGCTTTGGGCTATGGCCACGTTGGGATTTGAGGAATATATTGATCCGCTTAAATCCTACCTTAATAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAATCTGCTAAAAGAGATGCAGTTGGAGTCTTGGCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTGACCTACATTAACACTCAAGGACAGCACATGATCATTCCTTCAATGCAGAATAATGAATAA 522 45.21 MADPPTSPAGGSHESGGEQSPNTASAVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLNRYRECDAKGSSRGGDESAKRDAVGVLAGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16612019 16617394 + PI0017512.1 Cmetu10g1537 368400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1537 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Cmetu10g1537 173 SUPERFAMILY Histone-fold 30 130 IPR009072 GO:0046982
Cmetu10g1537 173 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmetu10g1537 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 144 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmetu10g1537 173 Gene3D Histone, subunit A 21 153 IPR009072 GO:0046982
Cmetu10g1537 173 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Cmetu10g1537 173 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Cmetu10g1537 173 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Cmetu10g1537 173 FunFam Nuclear transcription factor Y subunit B-3 22 148 - -
Cmetu10g1537 173 MobiDBLite consensus disorder prediction 1 30 - -
Cmetu10g1537 173 MobiDBLite consensus disorder prediction 12 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1537 K08065 - - csv:101223123 334.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1457 Cmetu-Chr7:4048243 Cmetu10g1537 Cmetu-Chr10:16612019 1.80E-41 dispersed
Cmetu10g1537 Cmetu-Chr10:16612019 Cmetu11g2212 Cmetu-Chr11:18828279 4.90E-34 dispersed
Cmetu10g1537 Cmetu-Chr10:16612019 Cmetu08g0078 Cmetu-Chr8:21871879 5.20E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g452 . . . Bda15g00184 Bpe04g01683 Bpe15g01076 . Bma08g01142 . . . . Car04g01334 . . . . . . . . . . . . . . . . . . Cone1ag1336 Cone5ag0323 . . . . . . Blo13g00735 . Bda14g00336 Bda15g00376 Bpe04g01683 . . Bma08g00961 Sed07g2409 . . . . . . . . Bhi07g01026 Tan04g0390 Cmetu10g1537 . Hepe01g0881 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1146 . 42 147 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.1 1.8e-47 186.4
Cmetu06g2349 . 6 152 CCAAT-HAP3 Transcription Factor Family AT5G47670 50.3 1.7e-37 153.3
Cmetu06g1146 . 44 169 CCAAT-HAP3 Transcription Factor Family AT1G21970 72.9 7.5e-49 191.0
Cmetu07g1457 . 9 136 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.0 2.3e-37 152.9
Cmetu06g2349 . 1 152 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.0 1.3e-49 193.0
Cmetu07g1457 . 27 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.2e-47 184.1
Cmetu11g2212 . 1 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.4 4.0e-46 181.4
Cmetu08g0078 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 4.5e-45 177.9
Cmetu10g1537 . 11 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.3 3.2e-43 171.8
Cmetu01g2588 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.0e-37 152.5
Cmetu10g1537 . 1 118 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.7 3.7e-49 191.4
Cmetu08g0078 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.1e-48 188.3
Cmetu06g2349 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 9.8e-42 166.8
Cmetu07g1457 . 14 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.8e-41 165.2
Cmetu01g2588 . 34 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.3e-38 156.4
Cmetu01g2588 . 44 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cmetu06g2349 . 19 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.2 1.2e-39 159.8
Cmetu07g1457 . 30 138 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.2e-38 154.5
Cmetu08g0078 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.7 1.9e-62 235.7
Cmetu10g1537 . 7 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.9 5.6e-54 207.6
Cmetu07g1457 . 29 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.2e-41 164.9
Cmetu06g2349 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 7.2e-41 164.1
Cmetu01g2588 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.2e-37 150.6
Cmetu07g1457 . 17 131 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.3e-44 176.0
Cmetu08g0078 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 6.6e-44 174.5
Cmetu06g2349 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.3e-41 166.0
Cmetu01g2588 . 22 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.0 2.6e-40 162.5
Cmetu10g1537 . 28 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 4.9e-39 158.3
Cmetu06g2349 . 1 126 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.7 4.2e-50 194.9
Cmetu07g1457 . 25 130 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 9.0e-45 177.2
Cmetu08g0078 . 11 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.8e-44 174.5
Cmetu10g1537 . 14 138 CCAAT-HAP3 Transcription Factor Family AT5G47640 65.6 7.6e-44 174.1
Cmetu11g2212 . 1 112 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.0 2.1e-41 166.0
Cmetu01g2588 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.3e-38 156.8
Cmetu08g0078 . 12 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 8.3e-61 230.3
Cmetu10g1537 . 12 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.6 9.8e-54 206.8
Cmetu06g2349 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.5e-41 166.4
Cmetu07g1457 . 18 122 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.3e-41 164.1
Cmetu01g2588 . 19 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.2 1.3e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8664 PF00808 CBFD_NFYB_HMF 4.10E-28 CL0012 Cmetu TF