Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu10g1611 ATGGCCACCATTTCTCTCTTCCTTCTCTCCCTTCTCTTCTCCTCTCTCTCCGCCTTCCTCTGCCGGACCTTACCTCCGACCCCCAGAACGTCCGTGCTCGATGTGGGTGCTTCCATACAGAGAACTCAACAGATCTTTGCAATGGAGCCGAAATCTTCAACCCCAGATGAAACTACAGTCTCTGATTCATCTTCCTTGTCTCTCCAGTTGAATTCCAGGATTTCTGTTTTGAAAACCTCGCACAGTGACTACAAATCCCTCACATTATCCAGATTGAAGCGCGACTCTGCTCGAGTCAGATCCTTGACTGCTAGGATAGATCTAGCCATTCGAGGAATTACGGGAACAGATCTTGAACCCCTCGGGAATGGTGATGGTGGTGGTTCGCAATTTGGGGCTGAGGATTTCGAGAGTCCGATTGTGTCAGGCGCGAGTCAGGGGAGTGGTGAGTATTTCTCCCGAGTTGGAATCGGTAGGCCGCCGAGTCCGGTTTATATGGTGCTTGATACTGGCAGTGATGTAAGTTGGGTACAATGTGCTCCTTGTGCTGAATGTTACGAGCAAACCGATCCAATTTTTGAACCGACTTCCTCGGCTTCTTTCACATCTTTGTCCTGTGAAACAGAGCAATGCAAATCGCTCGATGTTTCAGAGTGCCGGAATGGTACTTGTCTATACGAAGTCTCTTACGGCGATGGCTCTTACACCGTCGGCGATTTCGTTACTGAAACCGTTACTCTCGGCTCAACTTCTCTCAGAAACATCGCCATTGGCTGCGGCCATAACAACGAGGGTTTGTTCATCGGCGCTGCCGGATTACTCGGACTTGGCGGCGGCTCGCTCTCGTTTCCTTCGCAGCTTAATGCCTCGTCTTTCTCGTACTGTCTCGTGGACCGTGACTCTGATTCCACCTCAACTCTCGATTTCAACTCACCGATTTCTCCCGAGGCTGTAACCGCGCCGCTTCACCGGAACCCTAATTTAGACACGTTCTTTTACCTTGGGATGACGGGGATTAGCGTCGGAGGCGCTGTTCTTCCGATTCCCGAGGCTTCGTTCCAAATGAGCCAAGACGGTAACGGCGGGATCATCGTCGACTCCGGCACCGCCGTGACGCGGTTGCAGACTACCGTTTATAACGTACTTCGCGACGCGTTCGTCAAGAGCACGCACGATTTGCAGTCCGCACGTGGCGTGGCGTTGTTCGATACATGTTACGACTTGTCGTCGAAGTCGAGAGTTGAAGTTCCGACGGTGTCGTTTCATTTCGCCAACGGGAATGAGTTGCCGTTGCCGGCTAAAAATTACCTGATACCGGTTGACTCCGAAGGGACGTTTTGTTTCGCTTTTGCCCCTACGGATTCCACGTTGTCAATCCTCGGGAACGCACAGCAGCAAGGGACACGTGTCGGTTTCGACCTTGCTAATTCGCTCGTTGGTTTCTCACCCAACAAATGCTGA 1461 51.81 MATISLFLLSLLFSSLSAFLCRTLPPTPRTSVLDVGASIQRTQQIFAMEPKSSTPDETTVSDSSSLSLQLNSRISVLKTSHSDYKSLTLSRLKRDSARVRSLTARIDLAIRGITGTDLEPLGNGDGGGSQFGAEDFESPIVSGASQGSGEYFSRVGIGRPPSPVYMVLDTGSDVSWVQCAPCAECYEQTDPIFEPTSSASFTSLSCETEQCKSLDVSECRNGTCLYEVSYGDGSYTVGDFVTETVTLGSTSLRNIAIGCGHNNEGLFIGAAGLLGLGGGSLSFPSQLNASSFSYCLVDRDSDSTSTLDFNSPISPEAVTAPLHRNPNLDTFFYLGMTGISVGGAVLPIPEASFQMSQDGNGGIIVDSGTAVTRLQTTVYNVLRDAFVKSTHDLQSARGVALFDTCYDLSSKSRVEVPTVSFHFANGNELPLPAKNYLIPVDSEGTFCFAFAPTDSTLSILGNAQQQGTRVGFDLANSLVGFSPNKC 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20253710 20255595 + PI0021748.1 Cmetu10g1611 368474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu10g1611 486 Pfam Xylanase inhibitor C-terminal 332 482 IPR032799 -
Cmetu10g1611 486 Pfam Xylanase inhibitor N-terminal 151 308 IPR032861 -
Cmetu10g1611 486 Gene3D Acid Proteases 129 309 IPR021109 -
Cmetu10g1611 486 PANTHER ASPARTYL PROTEASES 46 480 IPR001461 GO:0004190|GO:0006508
Cmetu10g1611 486 ProSiteProfiles Peptidase family A1 domain profile. 151 482 IPR033121 -
Cmetu10g1611 486 Gene3D Acid Proteases 310 486 IPR021109 -
Cmetu10g1611 486 FunFam Aspartyl protease family protein 2 311 486 - -
Cmetu10g1611 486 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 166 177 IPR001969 GO:0004190|GO:0006508
Cmetu10g1611 486 FunFam Probable aspartic protease At2g35615 131 310 - -
Cmetu10g1611 486 SUPERFAMILY Acid proteases 145 486 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu10g1611 K22683 - - csv:101222856 887.486
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0728 Cmetu-Chr7:20432635 Cmetu10g1611 Cmetu-Chr10:20253710 4.30E-71 dispersed
Cmetu07g1748 Cmetu-Chr7:23810341 Cmetu10g1611 Cmetu-Chr10:20253710 4.50E-61 dispersed
Cmetu08g1289 Cmetu-Chr8:10871404 Cmetu10g1611 Cmetu-Chr10:20253710 3.40E-66 dispersed
Cmetu08g1782 Cmetu-Chr8:22314200 Cmetu10g1611 Cmetu-Chr10:20253710 1.50E-29 dispersed
Cmetu09g0226 Cmetu-Chr9:10173987 Cmetu10g1611 Cmetu-Chr10:20253710 4.50E-114 dispersed
Cmetu10g1419 Cmetu-Chr10:16984865 Cmetu10g1611 Cmetu-Chr10:20253710 2.10E-114 dispersed
Cmetu10g1611 Cmetu-Chr10:20253710 Cmetu12g0397 Cmetu-Chr12:1188903 1.00E-20 dispersed
Cmetu01g1381 Cmetu-Chr1:19359640 Cmetu10g1611 Cmetu-Chr10:20253710 2.80E-102 transposed
Cmetu06g1716 Cmetu-Chr6:681548 Cmetu10g1611 Cmetu-Chr10:20253710 4.50E-114 transposed
Cmetu10g1611 Cmetu-Chr10:20253710 Cmetu12g2061 Cmetu-Chr12:1163690 4.20E-163 wgd
Cmetu10g1611 Cmetu-Chr10:20253710 Cmetu02g0941 Cmetu-Chr2:22827715 1.50E-125 wgd
Cmetu10g1611 Cmetu-Chr10:20253710 Cmetu09g0818 Cmetu-Chr9:4538425 3.60E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002030 1 2 1 2 2 2 4 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 66